HsaINT0187141 @ hg19
Intron Retention
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:13107]
Coordinates
chrX:47315671-47327159:-
Coord C1 exon
chrX:47326809-47327159
Coord A exon
chrX:47315798-47326808
Coord C2 exon
chrX:47315671-47315797
Length
11011 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACAGCATTGTGTCGTTACAGGCT
3' ss Score
6.55
Exon sequences
Seq C1 exon
CATCCAGCACAGTGAGCGGCCCCTGGGCACCACCAGAAAACATTTGTGAGTGAACGTGGAGTGATGACCATGTGGACACTGTCTTTCCAGGGTTTCTTGGAGCCTCTGCAGAGTCTGGGGGCCAGGCTTCTTAGTGGAAACTGCAGGATCTTCCTTCTGACCCCTGCTTGCCTCGCCCCAGCAGCTCCGGTTGAGTCCACAGATGCCAGCTCAGCTTCCAGCTTGGGGAAGAGTGGGGTTGTCAGCAGGAGAGCCTGAGGGCTGAGGCCCAGCGTGAACATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTGAG
Seq A exon
GTGAGGAGGGAGAGGACCCCAGAGGCAAGAATTCATTCAGTGAAGAGATACCCTGACCTGTCCCCAGGGCCTAAGGGCAGAAGCAGGTGAGTCAGAGGAAGTGGCAGATTCCGGACCTGCCACCCTGGAGACAGATCAGGGTCCTCTTGCTGAGAGTGAGCACCACTTGGCTGATGAGGCCACATCCAAAGCCCCGTGTGTTTCAGTGGACAGTGTAATGTGGCTGATTACACTAGAGGAGAGGGAGAATGTGGAAGGTGAGCCCTACAGCCTAGGGAGTGGGGGCAGCTCCCTGCAGGGCAAATGAGGGTGAGGTCCAGGTAGAAGCAGCCACTATCCATAGCCAGGGAGCCTCCATCCCCCACCACAGCACCAACCCTTCCCTCTCCATCGGCTCTTTACAGATGTCGGCTGATCCCCACCAGTGCCCCTTTCCCCCAGGTCTCTGGGGATCTGGCGATTTCTCCTCTATCCTGATTTAGGTAGAGAAAAATCCTTTTTCTTTGGAACTTAGAGACTGGCAGGGTAGTAGGGCCACCACAGTCTCTGGGGCCGTTCTGGCTGTCCCTTCTTTCAAAGACGAATAAAATGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACCTTTGGGAGGCCGAGGTGGGTGGATTGCTTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACGTGGCGAACCCCCATCTCTACTAAAAATACAAAAAGTTAGCTGAATGTGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGGAGAATGGCTTGAACCTAGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCATTCCAGCCTGAGTGAGACTCAAAAAAAAAAAAGATGAATAAAATGCCCCAGAAGACACATGACTCGCCCAGGCCTCTCAAGTTGGCGGTGACAACACTAGACTGGAGCCAGGTCTCCTGACTGTGTCTTCCACCCTCACCGCACCACAGCTGAGATCAGGTTTCCCGCTCAGAGCTCCCTTTCAGATCAGAGTTCCCATTGAGATTCTATAAGCCGAGGAGGACCACGAGCGAGCCAGACCCTGCCCGACAGCTCCCTCCTTTCAGACCTACCTGTGGATGCTGTTGGCTCTGGAAGGGTTCATTATCTCAGGGACTCAGGGTCATGCAGTCATTAGGATAATATTAAACTTTTAAATTTTTTTTTTTGGTCATTTTATAACTTCATAATAAAATATTAGAAAGTATACGTTAGCAAATAGAAGAAACTAAAAAATTACTTGTCGTTCCAACATTACCCAAAGTTAACCAGTGTTAACATTTAGCTGTATTTCCTTTCAGTTGTTTTTTCCTTTGTATGTGCATGTGTGCATGTGTGTGAGTATACGTGTGGGGCCAGAGTGTGCTACATACTATACACATACACATATATAGCTAAAGTTTTAAAACAGAATCATACTCTTTGGTTACCTCATTTTTAACTGGGCAGTTTAACATAATTTGCTAAGCAGCAAGTATTTTTCTTCATACACTTATGATGTCCATAATTTAGCCAGTTCACTATTTTTTTAATTTTATTTATTTATTTTAATGTTTTTTCTCTGAGGCAGTCTCCCTCTGTTGCCCAGGCTAGAGTGCAGTGGTGCAATCTCAGCTTACTGCAGCCTCAACCTCCTGGGCTCAGGCGATCCTCCCACCTGAGCCTCCCAAGTAGCTGGGACTACAGGCACATGGGACCACACCCAGCTGGGCTCAAACTCCTGGGGTCAAGTGATCTTCCTGCCTTGGCCTCCCCGAGTGCTGGAATTACAGGCTTGAGTCACCACCATACCCTGCATATTTTATTTTTAATTGACGAATAATAATTATGTATATTTATGGTGTACAATGTGATGTTTTGATATTTGTATACATTGTAGAATATTTAAATCAACCTAATTAACATATCCATTACCTCAAAGACTTATTTCTTTGGTGATGTGAACATTTAAAATCTGCTCCCTTTGCAATTTTGAAATAACATTACATCATTATTAACTATAGCCACCAAACTGCAATAGATCTCAAAAACTTATTCCCTCTAACAAAACTTTGTATACTTTGACCAATGTCTCCCCATCCCCCCACAACCAGTCCACTAATAATGTGCATTTAGGGTATTTCAAGTTTTCTATTGTGATTAAAACTGCTATGATAAAATTCCTACATTTAAATCTTTCTGCCAGCTGGGCATGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATAGTAAGACCCTATCTCAACAAAAATACAAAAATTAGCCAGGTGTGGTGGTGTGCACCTGTAGTCGCAGCTACCTGGGAGGCTGAGGTTGGAGAATCATTTGAGCCCAGGAGGTTGAGGCTACAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAATAAATAGTAAATAAATAAATCTTTCTGTCAAGTCATTGAAATTATGTTTTTGAGTCAAAGGTATAGGGTCATTAAATAGCAAGGGAATCAATGCTTGACAGTAGTACACTTCAACCTTGTCTAAGCTCTGCTCAATCATGTCAGTCACGGACCCACAGGTTAGGGCCATGACAATGTGGTCCTCCCCACTCCTGCACATGGCCTCTTGCCCAGCCAATAGTAGGGATTTCTAGACGAATGATTCTGGGCTCTGCAAGGCACATTTCTCCATTCATCTCTTCTTTCCCAACCACAGATCTCTGACCCACCTCAAGAGATGGAAATGACCGAGACCCTGGGGGGAATATTATTTATTGACTTATTTATTGGTTAGGTTCTTGGTTTTTTCATTAAACATCAGGGAGCGGGGTATAGGCAGAGATACCTAGGAACCAATAAAAATATCCCCAGGGTTTGAGGAGCAGCCAGTTGTACCAAGAAACAGTGGCTGAAGATGGAGAAGAAGCAGAGGGATCAGTAAGGTAAAGAGGGCTGGGAGGAGTCACAACGGAATAAGGAACAGGTACCATGGTGCACTTACTAGAGATGAAGAATAGCCAAGGGGTCCAGGGTATAGGTGGAAGAATAATGAAGCAAACAGGACATGAGTCAGACGCTGGAGCCAGAGACCAAGAAACAGTTTCTGAGGCTGGAGAAGTGGTGATCACTGAGGAGCAGGGAAGAGCCGAGGGTTAAAGAACAGTGAGAAGGATCATGAAATAGGAGGAGGTATCAGGAAATAGAGGAACCAAATAGCAGCCAGACGGAGCAGTCAGTATCCAGAGGGGTGAGGAAGCAGAAGAATCAGATAAAATGGAAAAGGCAAACATATCCAAGGAACTGGGTATGAGCCTGAGGGACAAGCAACTTCCCGAGGAACCAGGAAGCAGTTCCTTGGTTTAGAAGAGAGCTTGAGGGCACAGGCAAAAGACAGTGATACCAGGGAACAAGAAATGTGAAATACGACCCAGAGAATGGATTGCAGTCAGAGGAAGCAGGAGACAATTGCTGAGGCTGTAGAATGGGCAGAGGGATCAGGGAAGGGACAGAGCCCATGGAACAGGTGGAAAGATGAGAGAAGAGCCTCTGAAGCTGCAGAATGGCCTAGAGTACTGTGGAACACCTGGAGCAAGGAACAGTCACTGAGGCTGGGGGGCAGCCAGAGGGAGCAGCCAAAATGTGCTTGGGGCTGAGGGTCCACCAGAGGCCCTGGGAAGTAACCAGAGGAACTAGGGAACAAGTCAAGTGAGCATTAAACATGTATCCAGTGTGGGTAGCAGCCTGATTGACCAGTGGCCAGCTAGAGAGACTAGAGGAGAGCCAGAAAGAATGGTATAACTGAAGCGAGTTAACAGCCCGAGGGCCCATGCAGTAGTTACTGGGGTGAAGGCACAGTTGGAGAGTCTGGGAAACAGCCAGAGTTCCCAGGACCATCCTGGTTTGCCTGTGACTGAGGGGACATGGGACTTCCAGTGCTAGAACAGGAACATTCCTGGGCAAACTGAGACACTTGGTCACCCTACCCAGGAAGCAATCAGAGGAACCAGCCAATAGTTAGATGTAATGTTGAGTAATGGAGGCAGTGGAAGTACAGAATCCAGCTGTGGCATAGAACACGCAATAGTGCACTTTAGTGGGTAAGGGCATAAGCTAGCTAGTTAGGTACTACTCAAAGTGTGGTCCACAGACCAGATGCATGAACATCACGGGAGAGCATAGTAGAAATGTATTCAATGGCCAGGCACGGTGGTTCGCACCTGTAATCCCAACACTTTGGGAGGCCAAAGCGGGAGGATTGTTTGAAGACCAGCCTGGGCAACATGGTGAAACCCCATGTCTACAAAATAAATAAATATATGTGTGTGTATGTGTGTGTGTGTGTGTGTACACATATGTGTGTGTGTGTGTGTGTGTATATATATATATGTGTGTGATATATATATATATATACATACAAAAAAAAAATCAGCCGGGTAGGGTGGTACTGAGGTGGGAGGATCATCTGAGCCTGGGAGGTGGAGGCTGCAGTGAGCCGTGATTGTGCCACTGCACTCCAGCCTGGGTGGCAGAGTGACGCCCTGTCTCAGAAACAGGAAGGGAGGAAGAAAAAGAAGGAAAGAATGGAAAGAAAGAAATGTACTCAAGGAACTGTCCAAGGACAGGGAAGAATCAGGAGACTAGAGATTAGTCAGCAGAATCCAACAGCAGTCAGTCTGTGTGAGCCAGGAACAGCTGGAAGGAACAAGAAAGGCCCTTAGGGACCAGGGAACAGTCAGGTAGACTAGCACACAATCAGAATGGTGCCACAGAACAAGGATCAGCTGGAGGGACAACAAAGGGAACACAGGACAGTCAGAACAGGAAACAGGAGGCATGAATAGTTAGAGCGATCCAGGTAGAGTCAAAGAAAGCGATAAAAGAACGGGGGTACTCGGAAGGAACAAGAGACATTTAGAGGGAATAGGAAACAGAGGGACCAAGGAAAAGTCAGAGGGAACAACGACCAGCAAAGGGAGCAGGGACAGATCTGGGCAGGCAGCAAACAGCTGTACAGGAAGCAGCAAGGGAAGCGGGGAAAGCCAGAGGGAGGGAAGAGCAGTTGCAGGGCCACAGAGAACAGTCCCGGGGAACAGGAAACACTCAGATGGACAGGGAGGAGTAAAAGTAAAAATACAATTTAAAAATTTAAAAATTAGCTGGGCATGGTGGGGTGCACCTGTAGTCTCAGCTATTCAGGAGGCTGAGGCCGGAAGGATCCCTTGAGCCCGGGAGTTTGAGGCTGCAGTGAGCCATGATTGCACCACTGCCCTCCAGCCTGGGCAAAAGTTTTTACAGCTGGGTGCTGTGGCTCATGCCTGTAATCCCAACTACTTAAGAGGTGAAAGGGTTGCTTGAGCCCAGGAGTTTGAGGCCAGCCTGAGCAACACTGTGAGACACCCTCCTGCACCACCATCTCTACAAAAAAGTAAAAATAAAATTTAAAAATTAGCTGGGCATGGTGGTGTGCACCTGTAGTCTCAGCTACTAAGGAGGCTGAGGCGGGAAGGATCCCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCGTGATTGCACCACTGCATTCCAGCCTGGGCAACAGAGCAAGATCCTATCTCAAAAAAGTAAAAAAAGAGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGAACTTTGGGAGGCCGACTGGGCAGATCACTTGAGGCCAGGAATTCTAGATGAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCACTGTGGCAGGCATCTATAATCCCAGCTACTCAGGAGGCTGAGGCACTAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGATTCTGTCTCAAAAAAACAAAGGAAAAAAAGAAAATATCCTGGCCAGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGCCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTGGTTAGGCGTGATGGTGGGTGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGGATCACTTGAACCCGGGAGGTAGAGGTTGCAGTGAGCCAAGATCAAGCTACTGCACTCCAGCCTGGGCGACAGAGTTAAGATCCTGTCTCAAAAAAAAAAAAAAAGAAAAGAAAAGAAAATATCCTTAATTTTTTTTACGAAGACAGTTGATACTGTACATATATTGAATACTGATTTTTTAAAATCACTGTTTTTAAACCTTTTTATCATGAAATATTATACATATTTTGAATAACGCCACTATAAATATTCTTGAATGCATCTCCTGTTGTACATGTGCACATATTCCACGTGGGCATATATATTTCCATGAGTGGACTCACTGTGTCATATTGCCTGCATGTCTTCAACATTACCAGTTAGGGCCAAAATACTTTCCAGCACAGTTGTAGCAATTCCCACCTCCTCCATCAGCAGTATGAGAGTTCTTGCACCATATTCTCTTCAACACTTGGTATTATCAGTCTTTTTCATTTAAGACTTTCTAGGGGTTGTGTAATGCTATCCTTTGTGGTTTTAATTTGTATTCCCTGGCTACTAAGAAGGTTAAACCTTTTTTTATGTTTATTAAAGCCTTGGATTTCCTCTTTTGTAAAATGAATGCTTCACCCATTTTTCTACTAGGTGGTCTCTTTTTTTCTTATTGGTTTGTACAAGTTCTCTACATCTTCTAGCTGAGCCCTTTGTTGATAATGTATGTTGGAGATATCTTCTACTCTGTGACTTTCCCTTTGTTCTCTTTTAATGCTGTGTTTTAAATGAATAGTAGTTCTAAGCTTTGTTGTAGAAAGACTTATCAATTTTCATGGTTCATGTTTGAGAACTATTTTCCTAATTCAAGGTCATGAAGATAGCCATCTGTATTATCTTCTAAAGGCTTTATAGTTTTTGCCTTTCACATTTAAGTCTATAATACATCTGGAATTTATATATACTTTTGAAATGGGATCTCACTCTGTCACCCAGACTGGAGTACAGTGACACAAACATGGTTCACTGCAGCCTCCACCTTCCAGGCTCAAGAGATCTTCCAGCCTAGCCTCCTGAGTATCTGAGACTGCAGGTGCTTGCCACCCCACTCAGCTAATTTTTATATGTGTGCTATATATTTTATTTTTTTGTAGAGACCGAGTCTCGCCATATTGCCCAGGCTGGTTTTAAACCTGGACTCAAGCAATCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTTGGAATTGATTTTTTTTTTTTTGAGATGGAGTCTCGCTTTTGTCACCCAGGCTGGAGTGCAATGGCGTGATCTCAGCTTACTGCAACCTCCGCCTCCCAGGTTCAAACAATGTTATTGTTTTGGCATGTAATGTGAAATAGAGCTCAGATTTTACTTTATTTTTTCTATACACAACCTTGTCTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAGATAGGGTCTTGCTCCGTCACCCAGGCTGGAGTGCAGTGGCACAGTCATGGTTCACTGCAGCCTCAGCTTCCCAGGTTCAGGTGATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACGCAACCATGCCTGGCTAATTTTTTGTGTTTTTTGTAGAGATGGGGTTTTGCCATGTTGTCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGGTTACAGGTGTGAGCCTCCACGCCCAGGCCCTGGCAACATTTGTTGAAAATATTTTTCCTCACTATCTGCCTGGACACCTTTGGCATAAATCAGGTGACTGTATATGTGGGTCTGTTTCTGTACTCTTTTTTCTTTTTTTGAGACTGAGTCTCACTCTGTTGTCCAAGCTGGAGTGCAGTGGCCCGGTCTTGGCTCACTGCAACCTCCGCCTTCCAGGTTCTAGTGATCCTCCTGCTTCAGCCTCCCAAGTAACTGAGACTACAGTCACGTGCCACCATGCCCATGTAATTTCTGTATTTCTAGAAGAGACGAGATTTCTCCATGTTGGCCAGGCTGGTCACAAACTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCTGATCCACTGCACCCGGCCTGTACTCTATATTCTGTTGCAATGGATTATTTGTCTATCCTAGCACCAGGACAACAATGTCTTAAATTTCCATTGCTTTGTAAGTCTTGAGGTCTTGTAAAGCATGTCCTCCCACATTGCTTTAACTATTCAAGAGTGTCTTGGCAGGCCGGGCACAGTGGCTCACGCCTACAATCCCAGTGCTTTAGGAGGCTGAGGCAGGTGGATCACTTGAGGCCAGGAGTTCTAGACCAGCCTAGGCAACATAGGGAGACCCCTGTCTCTACAAAATACAAAAAAAAAAAACAAAACAAAAAAAAAACGAAGCAGCATATGGTGACGTATGCCTGTGGTTGAGGCTGCAGTGGGCTGTGGTTGCGCCACTGCACCCTAGCCTGGGTGACAAAGTGAGACCATGTCTCTGAAAACAAGATACAAAATAATTTTTTTTAAACGCCTTAGCTATTCCTGGCCATTTGCACTTCCACAGAAATTTTAGAATTGGTTTGTCAGATTTTACAAAAATCCTGTTGTGATTTCAATTGGGATGGCATTGAATGTATTGATTTCTGCTTTTTAAAGATTTTTTCTCTTGGGCTTTACTCTATTGTTATTTTTATAATGTCTTTATTTCAATGCTTAATGCATGGAATTTTGGACTTTATTCTTTTGTAATATGAGCACTGGAGACCCTAATTTCCACTTTAGTTACCATTTCTTAATCCAATAAATTCTTACATGTACTGATTACATTGATATTGAGTGTATCTTCTTAGACGATCAGTTATTTTGAACTGTATTTTTAAACTTTAAAATGATGATTTCAGAAAAGTTTCGTCTTATTACTGATTTCTGACTTAAATACACTTGGTTTAGAGATGGTCTGTAAGAGATGGTTTCTGTATCGTCTCTATCTGTGTGCCCTTCCTGGTTCGTCTCATCTGTTTCCCAGCTCTATATGAGAACTCCCAAATCTTACCTCTATAATAGCCCAAAAGCTTATTGTATAACTCCCTGCATGTTTTACCACCTTTATTTCAACATGGACAAAATGTAACATTATGTTTCATTCTCTTCCCCACTCCCTTCCTAATCTACTAGCCCCTCTCAGTATATAACACCACTGTCTGCATGGTTGTACAAAACCGATAACTGAGAATTGCCCTAGAATTCTTTTTCTCACTCCCATAATTCAGGCTCTTTAAAACACAGCATGAACACCTTCTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGATGGAGTCTCGTTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCGCCTCCTGAGTTCAAGCAATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGATTACAGACACCCGCCGTGCCCGGCTAATTTTTGTATTTTTGGTAGAGACGGGGTTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGGTGGGATTACAGGCATGAGCCACTGCGCCCAGCCAACACCTTCTTTTACTTGCCCATGACAACCACTGCCTTAAGTCCAGATTGTCTTATTCTCTCACATAAACTCTGTAGTGCATCTCCAGACTGATCTGGACTCACCCATTTCAAACATTCCTCGTGATCAATCCTTTTTTTTTTTTTAGACGGAGTCTCACTCTGTATCACCCAGGCTGAAGTGCAATGATACAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGTCTCAGCCTCTCAAGTAGCTGGGATTACGGGCGTGCGCCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGCTTTACCATATTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGGGCTGAGATTACAGGAGTGAGCCACCATGCCCAGCCTGATGTATGTTGAATACTGTTTGAAATCACACAATTACCATCATGTCTTTTCCTGCATATAAATTGCAGTCCATTCTCTATTAGAAAAAAAGACTTGTTCCTTTTTCTGATGCTAGTATATCTCTACTGGATTTTCCTCATAGTCACCTTCTCAATATACTATACAGACTCCTTTCCTTTATATGGTACTACTTGCAGTTCCCAGAATCCACCATGTATTTTTCTATTTTCCTTTCTCCACACTGTTGCTCATGCTTCTCCCTTCTAGATAACTCTCGCCCCACTGTCTCTATGAAATCTAACCTTATACCTCCTATACTTTTCTTCCAAATTCCTAAAGCTCCCTTTGTGTCTGCTGTTGGTTATCCAAGTCTTTAAGTTGCTTTATATTTTACTCAACTCTTTATCACCATTGCCTAGCACATCATCTGACACATAATCGGCCAGTATCTTGTTTTTAAGTTAGCTGGAGGACTTAAAGAGAGCCCATTTAAAATCCTCATTTTGAAAAGAGAATGAATGAATAAATGAATTAATGTAGTACACAACAAATGTCAAGATACTTTAATAAGTTTTTTAGCTCTCACAAAATAAAATACAAAACTAAGTACTTAGTGAAAACCCTACATGATACATTATGGTAAAAAGCATTAAAAACAACTTGCTATCTACCTTCTTCCATCCCCCAGTGCTGACCATGCTGCCTTGAACAGCATTGTGTCGTTACAG
Seq C2 exon
GCTTCAGTGTCATTTGAGGACGTGACTGTGGACTTCAGCAAGGAGGAGTGGCAGCACTTGGACCCTGCCCAGAGACGCCTGTACTGGGATGTGACACTAGAGAACTACAGCCACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-ZNF41:NM_007130:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)