BtaINT0165448 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002113 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:HGNC:13107]
Coordinates
chrX:91044174-91044478:-
Coord C1 exon
chrX:91044455-91044478
Coord A exon
chrX:91044295-91044454
Coord C2 exon
chrX:91044174-91044294
Length
160 bp
Sequences
Splice sites
5' ss Seq
TTAGTGTGT
5' ss Score
-1.77
3' ss Seq
ATGGGATTGTATTTTTACAGGTG
3' ss Score
7.1
Exon sequences
Seq C1 exon
CATAGCAAATGTCAAGATACTTTA
Seq A exon
GTGTGTTTTTCTCTCACAAAATAAAATGCAAAACTGCTGAGTGAAAAGCCTACATGATACATTATGGTAAAAATCATTAAAAACAACTAACTTCCTAGTCCTCTTCCCTCCATCGCCCAGTTCTCACCATGTCATCTTGAATGGGATTGTATTTTTACAG
Seq C2 exon
GTGTCATTCGAGGATGTCACCGTGGACTTCAGCCAGGAGGAGTGGCAGCACTTGGACCCTGTTCAGCAGCGCCTGTATTGGGATGTGACACTGGAGACCTACAGCCACCTGTGCGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002113:ENSBTAT00000002726:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]