Special

MmuINT0178599 @ mm9

Intron Retention

Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:143997933-144001759:+
Coord C1 exon
chr5:143997933-143997995
Coord A exon
chr5:143997996-144001632
Coord C2 exon
chr5:144001633-144001759
Length
3637 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TTCTGATCATGTCGTTGCAGGGC
3' ss Score
7.11
Exon sequences
Seq C1 exon
ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA
Seq A exon
GTAAGTCTGGCTTTGTTTCCGTTGTCTAGTTTGGTTTACTACACTCGAAGAGGCAAAGGAGAGATCAGACTTTAAAGGGGAAAATAGATAAAACAGAAAGAGATAAAAGAACCAGACAAAACAGTAGTGGACAGTAGTAAGCATTGGTTGAGTGCATATCTGTAGGTGGCATAGCCCCTACCAAGTCCTCAGGATGCTGTAGTTGACACCTTGACTATATTTAGAGATGAGCCTATGGACGTGCCTGTCGGGATTGTCTTGATCACATTCATTGATGTAAGAAAACCCATTTTGTTCTGGACAAGACCATTCTCTGGGCATCCTGGACAGCATAAACTGGAGAAAGAGACTTGAGTACCAGCAAACATGTCTTCCTCCCTCTCTTGTTTCCTGATTGTGGATTTGATGTGGCTCCTGCTGCCTTGGCTTATGACGGGCTGTACTCTTTGATCTCCAGTGGTATTCTAACACAGGCATACACACACACTCACGTCCTATTGACCTGTCTGTCTCTAGCAGTCTCTGTGGATTCCTCTGTCTGTTTCTGTGCTGTTTGTCTTGCTGCCCTGTCCCTGGATTTAGAATTTCTCCTGCTCCCATGTGGATCTTTTGCCCTACTTACCTCTGGCCCTCCTGGCTTTCCCCAGCGGCTCTGTGTTGGTTTACCTGTGGGTCAGCCAGCGCCTGCTGAGCATCTCTGGAGTATGTCCAGACAACGCGTAACGGACCCATGCATCCGAGTGGTCTGTTCGCCTGTTGTTGTACCGTCCCCACCTAACGGACCCCATGCATCTGAGTGGTCTCTCCGCCTGTCGTTATACCGTCTCCTGTTCTTCCCTTTTGTTGTTCCACTGCCCTGCCTGGAACTCTCTGAGGATGCAATGCGTTCAGATCCATTTTCCACCACCAAAGAATTCACTTTTCTCTTACGGTCTGTGTAGTTTCTCTTTGTTTGGTTTGTTTCAATTTCTTCGTTTTTGCGTCATTGCTTGGTTCAAAAAGGGTATGTAGCTCAGGCTGTCCTGGAACTCTTCAGCCAGGGTTAAAGGTATATGCCACCATCCCTGGCCCTGGTGATGACTTTCAATGACCACGACGTTCAGTGGCAGACCCATTTGATTTTTTTTTCTACCCTCAAATACCCTTTCTTCCCCTTGGCTAGAGTTACTTGTTAATTAGGAGTCATTTATTTGCTGGCAGATGCCATTGTGCTCTCCTAGGCATTGGCATTCACCAAAGAGTTGAGTCTTCCTTCCCAGCGGCTCAGTCAGGTTCCCTTAGTGGGAGAGTCCCAAATAGAGACACACAGATTGGGGAAGAAGACAGTGCTAAGTTTATCCTCAGTGTGCTCTCAGTAAAGATCTGGGCCCTGGGTGCTTTTAATATGAGAGAAGTTCATCTACTTGAAGACAGATTCTGTCAGCTCATAGTCACGTAGCCATAGATCTGTGGTCTTGTCTGATCTTACTGTTTGGGTTTGGTTTTTTTTTTGTTTTTGTTTTTGCTTTTGTTTGTTTAAATTATTTGTGGGTGTCACATGCCATGTTGGGTGTGTGTGGAGGTCAAAAGCCAAGGTTTAGGGAGTCAGGTTGTAGGGATTGAACTCAAGTTACCAGGTTTGGTGGCAAGCACCTTCGCCTGCTGAGCCATCTCGCTGGCCCCCATGTTTTCCTTTATAAGGCGCTGGCATTTACATTTCTTTTCCAGAGCAATGATTTCATGTTTTTCTCTCCTGAAAACAGCTCACAGGTCACAGGCTTGAAGCATCTTTGTCATATGGTTAATGTATATTTATCATAGTATACACTCGTGTGTATATATATATATATATATATATATATATATATATATACTAACTGATAACGTAGGTACCACAGGAATCTACTTCATTGTGCTAAGTGCCTCCCACAGAGTCTGTGGTGCCTGCCGGTGTTGGCAGGAAGCAGTTGTTGGGCTGATGTGTTTGTGAGTGAAACAGTTTATGCAAAAGCTAAGCACTGAAAGGTAGTTTGAGGATCTGGGGCATGGCTCAGTGGTTAAAGTGTCTGCCCCACAAATGTGTAGACTGACGTTCAGATTTTCAGAAACCCATAAGAAATGCCAGGTGGTTGTGTCAGCCTGCCTGTAGTGACAGCCATGGAAGGAGACAGCAAGGGGATTGTGAGAGCAAGTTGGCTAGGAAGGTGACCCTAGCCGTGTCACCACATTCTGGGGTGGATTGAGAGGCTGTGCAGTGCAAAATGTTGAAGCATGGGGCGTGTATGTCTAGAGTGCAGGGACTCGGACGAGCAGTAATAACTTGGGAAGTGTTGGTACATGGAGGGCAATTAAACTGTCCATGAATCCAGGAAGGCTCTCCATCAAAGCAGTCAGTGCTCTGGGCACCTGGGTACACGAGGAAGAGCCAGGGAAGTAAGTAAGGGGTGGGGGCACCCACTTTGTTCCTATACGGGAGACAAGATGGAGGGTGTTCGGAAGAGCGCCCCTTGGGCCTGGGCACCTAAGTGGTGGGAACTTCTGTTGATTTTGCATTCCAAGCCTGCTGCTGCTGCCACTGCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTTCTTCTTCGAGACAGGGTTTCTCTGTGTAGCCCTGACTGACCTAGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATTTGCCTGCCTCTGCCTCTCAAGTGATGGGATTAAAGGCGTGTGCCACCACACCCGTTCCCCTTCTTCTTCTTTTTAAGATTTATTTCTTTTTACTTATGTGAGTACACTGTAACTGACTTCAGACACACCTGAAGAGGGCGTCCGATCTCATTACAGATGGCTGTGAGCCACCATGTTGTTGCTGGGACTTGAACTCAGGACCTCTAAAAGAGCAGTCAAGTGCTCTTAACCCCTGAGCCATCTCTCCAGCTCAGCCCAGTGCTTTCTTAATGTGTAAAAATGAGCCCCAAGGCAGTGGGGTTTCTTTCCTTTCTTTTTCACGTGTGCATTTGTGTCTATGCATGGTTTGCACGTCTCTGTGGATGTGGGGGCCCAGGTTGGTGTTGGGAATCATCAGCCACCCTTGTACTCCATTCACTGAAGAAAGGTCTCTTATCCCAACCCAAAGCTCTCCAGTATGGCTAGTCTCGCTAGCCATCTTCCTTAACTTCCAAGATTGAAACTACAGGTGAGCAGCCATGCCCGTCTGGCATTTACATGGCTTTCTGGAAGTCCAAACCCTGGTACAAGCACTCATATTGCAAACACTTTTCCATAGCCCCGAGGCAGTTTGCCTTTGATAAGCATGCTTTCCTCTCACAGTCAGTAATATAATATAAGGTATGCAGTGTTCACGGTTAGCTGGACCAGTGAGCTCGGGTGCCCGCTCTGTGTGATCTATCTGATTCTGATCATGTCGTTGCAG
Seq C2 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587-Zfp12:NM_177681:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.164
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032591





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000076693, ENSMUSP00000123731
  



Associated events






Conservation


Human
(hg38)
chr7:6697812-6705158 
ALTERNATIVE
HsaINT0186176
(ZNF12)
Human
(hg19)
chr7:6737443-6744789 
ALTERNATIVE
HsaINT0186176
(ZNF12)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chr2:351375-351376 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"