HsaINT0186176 @ hg19
Intron Retention
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:12902]
Coordinates
chr7:6737316-6744854:-
Coord C1 exon
chr7:6744790-6744854
Coord A exon
chr7:6737443-6744789
Coord C2 exon
chr7:6737316-6737442
Length
7347 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAATCACGGTGCCATTTCAGGGG
3' ss Score
4.76
Exon sequences
Seq C1 exon
ATCTGCCTCCGCTTTCACAGTCCTCCAGATTTTTCCAAGAGCAGCAGAAAATGAATAAATCCCTG
Seq A exon
GTGAGTGTTTCTGTTCATGTATTTATTCTCTACTCTGATTTACAATACACCTTAGGAGGAGATTAAGGGTTCAAAGTTTAAAATGGGAAAGTAGAAATAGATACAAGATTTGGTCAGACAGAACAGTAGCCATCAGCACCAAGCCTTTTTATCATATTCATATGCGCAGATAGCGTGATCCTTAAAGAGTTCTTGAAGTCAGAGTACAAGCGTCTTATGTTCTTGGCATTTATCACAAAAAATGATAAATACCATCCATTCCTTGACTTACATTGACCGTAAGCAGAATCACTTTTGTTTTTGCATGAATTTTAAAGATTCCTCTGAGATCATTATCAACAGCTTTCCTAAATAATAACCCTTGAACCATTGCAATTCTTGCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACCAAGTATTGCGCTCTGTCACCAGGCTGGAGTGCAGTGGCGCTATCTCAGCTCAGTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCATCTGCCACCACACCCGGCCTTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGCTCTCGAACTCCTGAGCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGAGCTTACAGGCATGAGCCACTGCGCCCAGCCCATAATATTTCTAGTAACTAAAACATTGTTGTCTCAAAGGTAGATTCTTTTTACTGCTCTATCCGTTGCAGAAATGGCCTTCTCACCCTTAAATTAGTCTCCCTAAATATTTTCTTTTCTTTTTTTTTTTTAAAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCTATCCCTGATTCAAGCGATTCTCCTGCCTTAGCCTCCCGAGTAGCTGCGATTACAGGCACCTGCCACCACACCCAGCTCATTTTTGTATTTTTTTAGTAGAGACGGGGTTTCAGAAGCACTTGGGCCAAGCTGGTCTCGAACTCCTGACCTCAAGTGCCAAGTGATTTGCCCACCTTGACCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCATGCCAAGCCGCCTCCCTAAATATTTCTCTTAGTTTATCTGGGTTGCACAGCAGAAAGGACCATAATAAATCTCTGGCATAGATGCCCATTTTATCCCATAGCCTGTGGTCTTGGTCCTGTCCCTACCACTCCCCTGACCTTGTTGGAAAAGGTTGCCAATAATCCAGCACATGCTCTTAGTGGACATTTGCATCTTTGCCTTGGCCCACTCTGCAGTTTGCTCTGTCAGTTTGAGTGCCCTTTCTCTTCTTGCCTGCTTCCTGAAATTGATGATTTCTTTGGTCTTCATGTGTTGGTGTCCACTCTTGGCTCACGACTCTGTACCTATCTGATGTCACCCTCCTGTGCTTCTAACTACCAGCTCTGTGTTGGTTTTCCCACATAGAACTGTCCAGCCACCTGCTTAGCATTTCTTTGGAGTGTGTCCAAAGGACCCCTCAAGGTCATAGATGCAGCAGGTTCAGAATAATTATTTGGAGCCCCCCCACCTATGCCTTCTCTTGTTCCTATTGATTCATTGTTCCATCGTCCAGCCTGTAGCCCTATCGAGAAAGATGGGATTCTTTCTAAAGTTGTCCATTTTCTGACCTCGCGATTGTTTTGAGTTTGTACATGTCATATTCTAGATGGTTTTTATCCTGTCCCCTATCCCCTCCCTGCTGTTGTAAAAATAGCTTATTTTTTGGCCTCTCTACTGTTGTAGAGATTTTCTTTCTATACTGCTACTTTCCTCCACAAGCCCAGGCATATTGCATTTCCCATGTCGAGTATTTCTCCTGAAGTGTTCATCATATCGTGCTTCCCCCATGGGAAAAGCACTTGCGTGGCTCCCAGAGTGGCTACTACGAAAATGAGGTTGCCTGAAGCTGGGATGGGGAAGACTGTGGGTAAAGCAGGCTTGAGAAAAGGCCAGAATTAGGTTTCAGATGTTTAAAATTTGGGCTGTGTTGGTATGCAGTGAGTGGCAGCATCAGGAAGGCAGGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTTGGGAGCTGTGTTAGCTGTGTTAGTATGCAATGAGTGGCAGCATCAAGAAGGCAGGTGTGTGTGTGTGTGTGTGTGTTTTGGGACACGAATCTGGTGTGTGTGTGTGTGTGGTTTGGGACACCACTCTAGGGGGTGTGTGTGTGTAGAGTTTGAGACACAACTCTGTTGTGTGTGTGTGTGTGTGGATTTTGAGATATATCTCTCTGGGTGTGTGTGTGTGTATTTTGACACACAAATCTGCTCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTTGGGAGACACATCTCGTGTGTGTGTGTGTGTGTAGTTTGGGAGACACATCTCATATGTGTGTGTGTGTGTGTGTGTGTAGTTTGGGAGATATATCTCTGTGTGTGTGTGTAGTTTGGGAGACACATCTCGTGTGGGTGTGTGTGTGTGTAGTTTGGGAGACGCATCTCGTGTATGTGTGTGTGTGTAGTTTGGGAGACGCATCTCATGTGTGTGTGTGTGTGTGTGCAGTTTGGGAGATAAATCTGTGTGTGTGTGTGTGTGTGTGGAGTTTGGGAGACGAATCTGGTGCGTGTGGAGTTTGGGAGATGAATCTGGTGTGTGTGCGTGCGTGTAGTTTGGGAGACGAATCTGGTTGTGTGTGTGTGTGTGGAGTTTGGGAGATGAATCTGGTGTGTGTGCGTGTGTGTAGTTTGGGAGACGAATCTGGTGTGTGTGTGTGTGTGTGTGTTTGTGGAGTTTGGGAGACGAATCTGGTACTCTCCCATGTGCAGTCTGGTAGAGAAGGAGGAACTGGGAAGGTGCTACTGGTCAGGCTAGAGGGAGAACCAGGAGCGTGCAGTTTCTGAAGCCAAGGGAATGAGAAGCTTCAGGGACAGGTGATCAACTGTGTCAAATGCTGTTAAGAGTCCAGCCCAAGGAAGACTGAGAAATAGTGCTGGGATTTAGCTCAGGGGAGGTCATGTGACTCTCTGAGGCCCTGTGGCTGGATCTGTAAGGGAAATCCTGATTGGAGAGGTTTAGGAGAGAGTGGTAGAAGAATTGAATTTGGTCTATTGAGAATTTTTTTTTTTTTTTTTTTTGAGAAATTTTGCCCTAAAGGAAAAAGAGAAATTGGATAGTAGCAGGAATAGGAGTTGAGGTTAAGAAAGGATTTTTCATTTTGTTTTGTTTTGATGGGAGAGATAATAGTGGGGTGATTCTGTCGAGAATGAGAAATAGTTGTTGCCCATGGAGTGAGAATGGCTGTGGGGCCTCGAGTCAGCCAGAGGGGACAGAGATGCAAACAGTTGGAGGTGTCCCATGAGGTGGTTAGAGAAGAGGGTAGACATAGCATTCCTATTTGCTTCTTTTCTCAGGGAAATAGCTCGTCAGCCAAGAGTGAGGGGTGACGGCCGGGTTTTGGGAGAGAGCAGCTGCATCCTAACCACCCCCACACATGCTCAGCCAGCCGTGAGGACCATCCTTTCCTTCTGTCTGAAATCCCAGCTCATTTCTCACAATGTAAATGTAACATACTACTCTTTTGGGAGCTTGTGTCATGATACTGGTGTTTCTCAGCTGAAAGCGATTAGAGCAGCAGCCAGTCTACCACACAGACACCTGCTGTTCTGGGGCTTCAGGAGTCCCAGAGGAAGCTCCCTCCTTGCTTGGCTCTGTGTCCTTCTGCTCAGCTAGCATTTTGTCTTTTTTTCTTAGACACTAACATCATTTGTCTTGGGGTTTGGGATATGATTTTAAGAGGCACTTCTTTCTCTCAAGGTGCTTATGTTCTCCTTGGAGGAGGTAATTCATGGATGTAATTATGGGAGATCATGGGAGTCGTTCTGGTCAATGCCTGGGAAACTCTGAAGTGATGATGAAGCAGAAGTCTGATTTTAAATGCATCCTCAGCCGGGCATAGTGGCTCACACCAGTAATCCCAACACTTTGGAAGGCTGAGGCAGAAGCATCACTTGAGCCCAGGAATATGAGGCTGCAGTGAGCTATGATTGCACCACTGCACCCCAGCCTGGGCAACAGATCAAGATCCTGTCTCGAATGAATGAATGAATGAATGAACAAACGAACAAACGAACAAATGAATGCACCATCAAAGTATTGTGATTCAGTCATTCAAGGAAGGGAAAGGTGGCATTTGCCAGCCCTGGAATAATTCGGGTTAGTGGCAGAGGCTTGTAAAGGCACTCAGGAGACCAGCATTAGGGGCCTGAGTAAGTCTCCTGGAGGGCTGGTGAGATTTTTGCTTCCTTAGAATTTGGACTTCCTGTTAAGAGACTGAGGGATGGGAATGCAGATAAATACCCAGATGGACCCAGGAGCCCCCAATGCTGGACTGAGTTTTGGTTTTGTCCTACAGAGAACTTCAAGCCTTCTAATTTGAAAAGTGTGTCATCTGTTGAAAAGCTGAAATTAATAGAGACTGACATTGTGAAAAACAAATGCAGTGGGGGTTTGAGGGGATTGAGTCAGTGACACTCAAGGGTGTCTAGCTGAGATGCTAGACAGAGGACTCTCCTAGCTAATGGGATTCTAAAAAGAATGAAATATTCTTTCTCAGGAAGATCACTTAGAATCTCTTAATGGAAAGACTCAAATATATACGATCTATAGGACAGAAGTGTGACTGAAATGGTTTGGTTATTTCTAAGTATGTTTCTGGTCAAGATCGTGTCCCTGGCACATATGTATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATTTTTTTTTTTTCCTCTCAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTACAGTGGCTCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATTTCCTGACCTTGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGTATTACAGGTGTGAGCCACCACGCCCGGCCGTCCCTGGCATATTTTTATTGTAAGAGGGATTCTGGTTTAAAATAGAGATTTAAAAAAAAATCGAAAATAAAATAGAGATTTTATGTGTTCACACTTATTGTAGTCATAGATATATGTGGTCTCTTTACTCATCTACTTTCATTTGTTTGCTTTCCTTTTGTGACTTTTCCTGAGCTGATGACTTTCTTCACATTTTTCCTCTTATGAGTCCTTGAAAGTCCTTTGCCCGTTTTCACCCATTGCACAGTGACCATCCTGACAGATATCAGGTGGACATACTAAGCAGGGACCTACCACTTGAATAAAGGAAACCAGGCTGACTTTCCTAAGAAATAAACAAGTTGTTATTGCTCAGCAAGGCAGGGCAATGCCATACGTGAACTTCGAGACTCTCCCGATCCTCATGGTGGATGACGTCTGAACAAAGTGTGCACAGAGTTTCTGGAAGCTCAGCTATTGCTCCCCAGGAAGTTCTCATCACCTGCTGGGGCAGTCCTGCACCTGGATTCATCTGGCTGGGGTGGGACCCACTTCTTTCCCCACCGTGTGTCCCATCAGCAGCTGGACACTCTCAGCCCTGATTACCCTCATCCTTCCCAGGCCAGCCAGGCCTGTCTGTGGATACGCCTATATCTAGAGCTGGGAGAGAGTGGCACGGCATCTCAGGGAGTCAGTAGAACCCAGCTTGCACTCATGGATCATTCCAGTCATTCCACATATGAAACCCAAGGTGTTCAGTCAACATCAGGAGTTTGTCATCATCTTACGTAGCTCTGAACATGACATGGCCTTTCCTTCCACACCTTCTACACCATTCCTGCTACCATATTTTCTTGAAATCATCTCAGCCTCTTTGTTCTTAACACACAGACACTGTTTTATGATTCTTTCTTGCCAATTACATAAATAACAACCACATAACCTTCAGTTGTTTAAACTTCTGTGTTTTATGGTTAATTTTCTGTCCTAATTTGGAAAGTGGTCAGAGCCACAGTAGAAAGTCAGCAATAACAGTAGATTTCATTGATAAATATGTGTTTTATCCAAAAAACTATGCTAAGTGCTTTTCGTGGATTAGTCCATTTAATACTGGTATTATGTATAGGTAGCATTATTCTCTTTATTTTAGAGGGGATGATATTAAAGGAAACAGTTATAATGGCTAGTGTGAGTACTTGTGAATGGGACACTTTATTCAAAAGATACACATTTATAGATGTGGTTTTGACAGTTTCCAGGTCAGCTGTCTGTTCCTCCTCAGGAATGTTCCTTTCTCCTAGAACGTGTACCATGGGAAGAAAGGAAATTTGGGGTTCCCAGCTGGGAATTAGGAAAACCTGAACCAAGCTATTACTGATAATTCATGTGACAGGCTGCATTCTGAACTGCTGTAGGCTTGGTCACTTGGCAGTAAAAATAAAAACTAGAATGTGTGTTGCCCAGCCTGTTTGTTATTTTGGTAATTGTGTCAAATATTGTGGGTTGGTTCCAGTAGTAGCTATGGTAGGAGCAGGTTTGAACAGGAACAGCAATTGAATTTCAGGGATGTTGAGTTTGCCATCTGGGACATATGTGTCTGGAATTTAGGAGAGAGGCCTGGACTGATGATGTAAATTTGGAAAATGTTGGTGTATAGATGGTAATTAAATTAGCCAGGAAGAGGGCTCACCATCAAAGCAGCAAGTACAGACAGCAAAGAGAAAAAGACTCAAGACAGCCGTAGGCCCACAACATTCAGGATGACTTGGAGTAGAGGAGGAGCCAGCAAAGGGACTGAGAAGGAGTGACCAGGGAGGTAAGAAGAGAACCAACATTATTAATGTTCTAGAAGCAAATTGAAGAATGTGCAAAGAAGCAGAGTGCATCCTGGGGTTCTGTGAGTGTCCCCAGGCCTGTGCTCCTCAGGGGTGAGATTCGTCCCTGCTGGTGTTAAGAGTTCCCAACAGCCAGGATTGTTTCTGGCTCACCGTGCAATCCCAGTGTTGTTTTTTTGTTTTTTGTTTTTTGTTTGATGTATACTGAATGAACCCCAGAACAGTGTATTTCTGATATGTTTGTTTCCCTTTGACAGTCTGTAACATAAAATAAAGGTATACAGTGTTCATGGTTAATTTTGCCAGTGAGCATGCTAAGATCTTGTACCTATGTGCCTATTTCACGTCACCCAATTCCAATCACGGTGCCATTTCAG
Seq C2 exon
GGGCCAGTGTCATTCAAGGACGTGGCTGTGGACTTCACCCAGGAGGAATGGCAGCAGCTGGATCCTGAGCAGAAGATAACTTACAGGGATGTGATGCTGGAGAACTACAGCAATCTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631-ZNF12:NM_016265:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)