MmuINT0178838 @ mm9
Intron Retention
Gene
ENSMUSG00000062040 | Zfp27
Description
zinc finger protein 27 [Source:MGI Symbol;Acc:MGI:99174]
Coordinates
chr7:30685257-30689078:-
Coord C1 exon
chr7:30688919-30689078
Coord A exon
chr7:30685358-30688918
Coord C2 exon
chr7:30685257-30685357
Length
3561 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
3' ss Seq
TGTTTTTGTTTTAATCCCAGGTG
3' ss Score
8.42
Exon sequences
Seq C1 exon
CACTTCTTCCTCACAGCTCTGACTGAACTCATAGAGGACCGCTAAGCTTCTGGTTGCTGAGAGGACAGGGTCTAGACCCAGCGTGATCATGCCAACTGACTGGACTTCAACCCTGGAAGCTACACCACTGGCCCCAGAGGATCTTGGGAGCTCATGTGAG
Seq A exon
GTCAGGGGGGCGGGGTCTTGGGGGTGAGACTTCCTCCAAGGAGTAGATGTCCCTAATTTGTCCCAGGAGTCTCAGAGGAGAAGCAGATAGGCCACCCGAACAACTGAACCCCTAAACCTGCCCCTCAGGGAACCAATCTTGATCTATTTATCGAAAAATCAAGAAACACCTGAGCAATGTCATCCACTCCAAAGGCAATGAGGGTGGACCATCATGAGAGACTGTTGTTTGGCATCCTACCGTGTTTATCTGTTGTCTGTGGATAAAATTTTTGGTAGAAATTACTTCCAGATAGGGTTTCTGAAGGAATGGCGCCATTTCTTTTCAGAGCGCCACACTGAACGCAGATAGTCTATTGATTCGGTTCTTGACATTTCTGCTTCTCAGTTAGTCTCCAATTTTCATTTTTCCTCCACAATTTTTACTGCTTTCCTTTTTGGGAAACATTGTCAACTTTGTCTCCTCCCGCTCTGTTGCGCTGCTGTTAACACTATCAACATTTAATTTCAAGTTTTGGTTTTAAACATTTTACACAGTGAGATAGGTCGCTAGGTATGCTTACCCCATAAGCTTGGAGACACAAATTCAATTCCTGCAACCACATAAAAGTGGAAAGAGAACAAACCCCATGAAGTTGTCTTCTGTCTCCATATACCATCATAGCACACACAGCTAAAGGCTGACAAGCAACACAGTGCCAAGGTTTCTCCATCATATATAGCCTGCACGTCTATCTCAGCAAAATGACCTTCACCAAGCAGCTGATCTGTAGAAATCTCTCTACCCTTGGCTCTGTTTTGTTGAGCCATATCCTTCCAGTCTTGAGGGGTTCTTCTTCTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGCATACTTCAGACACTCAGAAGAGGGCGTCAGATCTCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTGGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCAAGACTGAATATGTTGTAATTCTGATATCCTGCTCTCTATCCTGATTAATTTTAACAGGTTCACCTCCAAGCTTTGCCTCCAGTCCTCATTATTTTCTCTCTGCCGCTCAGTCTCCTCTGTGAGCTGCTGTATCCTTTACTCTCGCGTCTTTTCCAACTCCTGTCTCCAGCCTTCATTTTCCTCTAGAAATTCCTTTAATTCTAACGTTTCCTCTAGTCCACTACACTGCCGACTCTTAGATTTCTCTTTCTGCTGTTCAAACTGCTCCTCTATACATCCCTGTATCTTCTGTTCCAGGCCCTGCGTCTAGCTTTTAAATTTCTCTTTATGTTGTAATTCTGATATTGTTGTGTCTATCTTATTTTGACTTACTAACTTTAGTAAATTATCCTCTAGACTCTGTGTCCAAATTTTATCCCTAGCTCTTTGCTGTTCAGTTCAATCTATGAATTTCTGCATCTTTTGTTCTAGCATCTTTTCCAGCTCCTGTCTCTAACCTTCATTTTCCTCTCTCTGTGGCTTATCATGACCTATAAATCCCTGAACCTTTAGTTCCATCATTTGCTCTAATCCCTTTTCTAAGGCATGTAATTTTTAAATCTAGGGTCCCGTCTTTTGAGAAAATATAGTAAACCAAGATATTGTAAAAACTGTAATTGATAAGTGTCAATTAAATCTACCTCATTCAACCATACAAAATATTATCCCAGAAAACTCAAAAGGTATTTATTGTGTTTCTCATCTTTAAGTATCAATCTATTCTTTTTTTTAAGATTTATTTATTATTATTATTATATCTAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGTGTCAGATATGGATGCACCAGAAGAGGGTGTCATTACGGATGGATGTGAGCCACACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGGCTCTCTTACCCATTGAGCCATCTCACCAGCTCCCCCCTCACTCAGCTTTCAGTCCACACATTGTTGCAGTCCTGGATCACAGCCACAGCCATTTATTGGGGATGAGGGTGGGGGTGAGGATGGGATGGGGGTAGACTTTTATTTCAGGTTAGTTGAGTTCTGAGCCATATGTTGGTGTGCCAATTTGTTGCAGCGATTTCCAATCCCAGTAAGCCTGTATAAAACCACACAACCCAGTTATTATATTTATAACTATATGCCTAGATTGGGCAGATTTATCACTATCCTCACTTATTTCCCAGCTATGAGACCCTTTGCTACTTGCAGTTTTTCCTGGCCATGTGGTTCTGTTCCTTGTTGGCTCTACCTCTTCTTCCTCCATCCCCTCTCTCTCCCTTCTCCTTCCCTGTCCCCATGTGCCCCCACTCTCTAAAACCTCCAGTCCCACCTTTCCCTTCTACTGCCTTTATTTGACCAGTTAGAATGGGGAGAAAGTTCATGAGAGAAGCAGAATTAACATCAGAATATAAACAGCACCAGGGCAACCCACAACATGTCCCCCTTTTTGTCCAATTTAAAGGCTCTTTTCTCTTAGATATAAATTGAGCACAACCATCACAATTATGTAAATTATAAAGTACAATGTACACTTGTATATTATATTTGTATTAGTGGGTGTAGAGAGAATCTCTTGTGCACTGTGTAAAAGCATTCACATGTCAATAAAAAAGCCCATGGCCAATGAGCTGAGTCAGGAAATAGGAAGTGGGAGTTCCAGCAGAGAGAAAGAGAGAGAGGGGAATTATGGGAAATAGTCAGGCACTGGAGATTAGCCCCAAATTCTAAGGAGCAGACATAAGCATGAACCTGAGAAGAAGGTAACCAGCTCTGTGGCATGCTCAGAATAGAAGAAACTGGGTTATTGAGGTATGAGCTAGGCAGGGAACAGAGCAAAGGTTTTGCCTAGGCATTTCATCATATATAAGAAGTCTCAGTCATTATTTCAGGGAACTTGGGCATGGCTATGTTAAAAAATACACAGTTACAAGTGGGAGTAAGAGGACGGTTAGCTTTTACAGTTGAACAGTGCTCAGACTTTACAGAGTGGTTTTGGGTTGGTCTTCTGCTGAGATGGCCACAGGGAGTCTTTAATGTTTCCTGTCTGTGAGGTCTTGTGTTTAACACCATGGAGAATCCCATGATCTAGATAATCTCATCAAACGGCTCCTAGCAACACTGTAACCCACATGATAGCACCAGGCCCTGCTGTCAGCAGCTGCTTTTCTTACTCAAAAATAGAGGGGTGGGAAAAGATTGGCTCATAACTAGAAACCTAGAGCTGCATATTTAGGAACAGGACTTTGAGATGAAAGCCACCACGATTATTTGGGGATGGGGATGGGGTGGGGGTGGGGATAGAGGTGGGGATAGAGGTGGGGGTGGGGGTGGGCTGGGATTTCAATTTCCCGGGTTTCAATCAGCCACACTGAAGGATGATTTTTACTTATTGTAATAATGTACAACAGTGACAATTTTTGGAATTTTCGTTTCTTTAAAGAACACAGAAATGTTGTAAGAATGTGTTTTTGTTTTAATCCCAG
Seq C2 exon
GTGTGAGATACGGAGCTGCTTCAGACTGTCCGCAGCAGCTGATCATGATTTGCCTCGTGCTCTAGCAGGGGTGTGATTTTTGCCAGCAGCAGATAGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062040-Zfp27:NM_001037707:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: