HsaALTD0007461-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:25894]
Coordinates
chr2:95823096-95824838:-
Coord C1 exon
chr2:95824710-95824838
Coord A exon
chr2:95824605-95824709
Coord C2 exon
chr2:95823096-95823184
Length
105 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GTCTCCTTCTACCTTCCCAGCTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
GCAGCCCCAGCCTGCGTCCCGCTCCCTGAACCCTCGGGAGGACCACAGGGCTGTGGCCGAAAGACAGAGATTTGGACCTAGTGAAAGGACGCCGCTCCTTAGCCCCAGCTATGGACTCCACAGCATCAG
Seq A exon
GTTTGGCTCTGGAGCGTGCAGAGGGCCAGGAGCCCTCTTGGGGAGCTAGTACCGAGCCCGATATCAGGAGGACCCCAGGAAGAGGCCGGGGAATCCCACTGAAGG
Seq C2 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGCTCCCTGAACCC
R:
CCGAGGCCTGGCTTTCAG
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)