HsaINT0187488 @ hg19
Intron Retention
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:25894]
Coordinates
chr2:95823096-95825263:-
Coord C1 exon
chr2:95824985-95825263
Coord A exon
chr2:95823185-95824984
Coord C2 exon
chr2:95823096-95823184
Length
1800 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
GTCTCCTTCTACCTTCCCAGCTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
ACAGAGCTGGGTGTGTCCCTCCGAGTGCCCCCCGCTAGGGACTGTGCAGGCCGGAGCTAGGCAGGGACAGCGGGGCGAACCGGGCTGATAGAGTCGGTCCCTGCTCCTGTGAGGCTCTCACCGAATCCCTGCTGTTTCCGGGCAGCTGAAGAGCGCTGGGCCCTCGCGTCGCGGGCGTGGCTGTGGCCGTGTCTCCTGGTAGTCTGAGCCCACTGTGCGTGTGGATCCACGTGGGAGCTGGGTTCCAGAGCCTGGTCCTGAGGAGGAGCCGAGCCGGGG
Seq A exon
GTAGGAGGCCGGACTTGGCGAGGGAAGAGCACGACCCCGGGCAGCAGTGCGCCGCGCTGGGCGCACCGGGGTTTGCCGGCCCTGCTCTGGGCCCTGCAGGTCCGCTGGCCCCGCCGCGCCTAGTGGGGATGCCCCGTGTCCCCCAGGCAGCCCCAGCCTGCGTCCCGCTCCCTGAACCCTCGGGAGGACCACAGGGCTGTGGCCGAAAGACAGAGATTTGGACCTAGTGAAAGGACGCCGCTCCTTAGCCCCAGCTATGGACTCCACAGCATCAGGTTTGGCTCTGGAGCGTGCAGAGGGCCAGGAGCCCTCTTGGGGAGCTAGTACCGAGCCCGATATCAGGAGGACCCCAGGAAGAGGCCGGGGAATCCCACTGAAGGGTGAGGCTGTACTTCATCTGCCTTCCGTGTGGCGACATCTAACCTTCCAGACCCAGAAGGCTGAAGCCGCAGTCTCCTGGGTCTGGCAGGGGTCTCTAGATGACCGTGGCGGAGGTGGAGGGGATGGCCATGGAAAATTGTCCCAATGGCCAGAGGAGAGCAGAAGAGGATCTGATCTCTTCCTGCTGCGGCAGGGAGAGGGCAAGCAAACCCAAGAGGGAGTGGCCCTTGGCCAGGGATCAGAGGACGATAGGGCCATTTGGAGCCTTGTCATCCACCTCCTTAATCACCTCACTAATAAGGTTCTTCCAGTCGTTCTAGCTCAGCGGTGTATAAGGTCAGCAGTGTACATGGTGGGTATCTCCTCTGAGCCCCTTCCCCCAATAGCGTTGGGGGCAGGGCAATCCAGGTGACCCAGGAGGTTTTAAGCCAGTCCTAAGTTTAGAACGTCCTATCTCTAACCAGGTGGGCATTTTAATCCGACTGTTCATCCTTCAGTGCACATGCTCAAGGACACATAACTGGCCAGTGGAAGAACTGGGCCCAGTCCGTGGGCTTCCCACCCCCTCTTTTTTCCTTTATACCCTTGTTAATCAGTGTGGCTCTGGGAACAGCAGAGGCATTGCCCAGAAGTTCTCTAGAATTGCAGACTCTGGGGCCCCACACATCCTCAAACAGTGTCTTAGCAAGTCTTGAGCCAGAGTTTAACAAGATCCTCAGGGATCCACACACACATGAAGCTTGAGGAATGCCTAACTGTGCTATGCTTACACCCATGTTGTTAGCCTTAACTACTTCTCTGGCATGGTTTGGGTTAGTTTTTTTGTTTGTTTTAAGGCTTTTATGAACAGTATGATGCAAAGCTTTATAATGAAGGAGCTCTCAAGTGTGTTGCAGAGACCTAACAGAGCTTGGGAACACCAGGGGCAGCTTCTCAGAAAGAGGTGGCCTCTGAGCTGGGTTCCCAAGGATGAGGGGAGAGGTGTAACTTCCTCCCCTTAAAGCCTCATAATCCTGCATGGCCTTGCCTTGGGTCTTGTGTAATTGTTAACCTGTAGGCTAGATTTAAAGTTCCTTGAAGTTCTTTTCCATATTTATATTTCCAAAAGTCCTAGGAGATGACCTGCATACAGTATGCCCAGTAAATAACTTCAGTGGTATGGCCAGACTGGTCACACTTCACTCACTTGTAGACTGATGTGGGCTGTGGACAGGTGGGAGCCTCATGCAGCTGTGTACAGGGGCACTTCTCTCAATGTTTGAAGGCTAGAAGCTGCCTCTCAGATCCTTTTGATCCACTGGTGTCCTCAGAACAACGGAGGTGACATTCAGAGCTGTTCTGGGTCTCAGGCTTGGGAAGTCTGAGAGCTGTGTGTGCTGGCTGGGTCAGCTTCCCTTATGTCTCCTTCTACCTTCCCAG
Seq C2 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026-ZNF514:NM_032788:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTGGGTGTGTCC
R:
TGGTTGTTCCCTCTTCTCCTGG
Band lengths:
342-2142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)