BtaINT0165646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001947 | ZNF514
Description
Bos taurus zinc finger protein 514 (ZNF514), mRNA. [Source:RefSeq mRNA;Acc:NM_001110091]
Coordinates
chr11:1942111-1943563:-
Coord C1 exon
chr11:1942974-1943563
Coord A exon
chr11:1942200-1942973
Coord C2 exon
chr11:1942111-1942199
Length
774 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
GGCTCCTTTTACCTTCCTAGTTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GGAACCCGGGTGTTGCTTGGATCTTTGTGGGTTCAGCTACACCTGGTGCGCAGGCCAGCCATGGGGGTTGCGCCCTGAGCCAGTGACAGAGTGCGAAGTGTCCCTCCGTCTGCCCGCCTGCGAGGGGCTGAGGAGGCCTGGAACTGGGCGCAGAGTTGCAGGGCCGATCGGTTCCCTGTGAGCTCTCCAGAAGCAATTCTGGAGGAGCGCGGGGCACCGAGATCTCAGGTGTGGCTGTGGCCATTTCCTAGTGGTCTCCGTGGGAGCTGGGTCCCAGAGTTCGGTCTCCAGAAGGAGGGCGGCGGCCGGGCTTCTGAGGCGTCTGGGAGTGCGAGAGGAGAAAGAGCATCGCCTCCCGCAGTCACAGCCGCAGCCGCACTGCGCTCAGCTGGGACGCCAGTCTGGGTTTGACAGCCCTGCTGTGGGTCCTGCGGGTCGGCTGGGCGTGGCTGCACGAAGTGGGGATGCCCGGTGTCATCCGGTTCGCTCCCCGCTCCCTGATCCCCGGGAGGATCGCAGGGCCGCCGCCAATGACAAAGATTTGGACTTAGTGAAAGGACTAGCCCCAGCTATGGACTCCAGAGTTTCAG
Seq A exon
GTTTGGATATCGAGGGTGCCGCGGGCCGGAACCCTCCTGGGGAGTCAGTCTGGGTCTAGGAGGAGAAGGAAGACCATAGGATGAGGGCAGGGAGTCCCACTGGCGGGGCAGAGTCTGTCCTTGGGATTTCCCAGGCAAGAACATTGTAGTGCGTTGCCATTTCCTTCTCCGGACCCAGGGTTTGAACCCGAGTCTCCTGCATTGGCAGGCGGATTCTTTAGCACTGAACCACCTGGGAAGCCCTGACCTTATAATAAAGGGGCTCTTAAAATACGCTTTAGAGACCTAATGATGCTTTAGAACACTCAAGAAAGCGTCTCAGGAAGACCTGGCCTCTGCACTACTTCCCAAGGAGAAGGGGAGAGGTGTGACTTCCGCAAAGTCCCATATCTTTATGTGGTCTTGTCCTAGGCCTTATTTTGTCTTGTTAACCTGTCTTATACCCTCAGGTGACATTTAAAGTTCCTTGAAGTACTTCTCCATGTTTATATTTTCAAAAGGCCTAATATAGGACCTGCATATTGGAGGTCCAGTGACTACAAAGGAGTGGCCAGACTGTGGTCACCCCCCAGCTACCTACAGCTTGCTGTGGCCTATGGACACGGGGGGGCCTCATGCAGCAGTGTGCACAGGCAGCCTGTAGCTTGTCCCTCAGCTCCCTTAGGTCCAGCCTTATCCCGGGAAACCATGCGGGTGACACACTGACTTGGGGAGTCTGGGAGCTGTAAATCTCATGAGGGTTAGCCTTCCTTATGGCTCCTTTTACCTTCCTAG
Seq C2 exon
TTCTCCCTTCTCAGGACCCTGCTCTTCCTCCAGAGAGAGGCCTAGGAGAAAAGGGAACAGCCAGTTTATTCCTGAAAGCCAGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001947:ENSBTAT00000053384:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGTTCGGTCTCCAGAA
R:
GGAAGAGCAGGGTCCTGAGAA
Band lengths:
346-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development