HsaINT0187488 @ hg38
Intron Retention
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]
Coordinates
chr2:95157351-95159607:-
Coord C1 exon
chr2:95159240-95159607
Coord A exon
chr2:95157440-95159239
Coord C2 exon
chr2:95157351-95157439
Length
1800 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
GTCTCCTTCTACCTTCCCAGCTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
GGCGCGGGGTGGCGGGCGGGGCCTGGTCCTGTGAGCGTTCGGAGACTGCGGGCGCGCAGACCTGTACTGGGCCCGCGCCCCGGCCCCTTACAGAGCTGGGTGTGTCCCTCCGAGTGCCCCCCGCTAGGGACTGTGCAGGCCGGAGCTAGGCAGGGACAGCGGGGCGAACCGGGCTGATAGAGTCGGTCCCTGCTCCTGTGAGGCTCTCACCGAATCCCTGCTGTTTCCGGGCAGCTGAAGAGCGCTGGGCCCTCGCGTCGCGGGCGTGGCTGTGGCCGTGTCTCCTGGTAGTCTGAGCCCACTGTGCGTGTGGATCCACGTGGGAGCTGGGTTCCAGAGCCTGGTCCTGAGGAGGAGCCGAGCCGGGG
Seq A exon
GTAGGAGGCCGGACTTGGCGAGGGAAGAGCACGACCCCGGGCAGCAGTGCGCCGCGCTGGGCGCACCGGGGTTTGCCGGCCCTGCTCTGGGCCCTGCAGGTCCGCTGGCCCCGCCGCGCCTAGTGGGGATGCCCCGTGTCCCCCAGGCAGCCCCAGCCTGCGTCCCGCTCCCTGAACCCTCGGGAGGACCACAGGGCTGTGGCCGAAAGACAGAGATTTGGACCTAGTGAAAGGACGCCGCTCCTTAGCCCCAGCTATGGACTCCACAGCATCAGGTTTGGCTCTGGAGCGTGCAGAGGGCCAGGAGCCCTCTTGGGGAGCTAGTACCGAGCCCGATATCAGGAGGACCCCAGGAAGAGGCCGGGGAATCCCACTGAAGGGTGAGGCTGTACTTCATCTGCCTTCCGTGTGGCGACATCTAACCTTCCAGACCCAGAAGGCTGAAGCCGCAGTCTCCTGGGTCTGGCAGGGGTCTCTAGATGACCGTGGCGGAGGTGGAGGGGATGGCCATGGAAAATTGTCCCAATGGCCAGAGGAGAGCAGAAGAGGATCTGATCTCTTCCTGCTGCGGCAGGGAGAGGGCAAGCAAACCCAAGAGGGAGTGGCCCTTGGCCAGGGATCAGAGGACGATAGGGCCATTTGGAGCCTTGTCATCCACCTCCTTAATCACCTCACTAATAAGGTTCTTCCAGTCGTTCTAGCTCAGCGGTGTATAAGGTCAGCAGTGTACATGGTGGGTATCTCCTCTGAGCCCCTTCCCCCAATAGCGTTGGGGGCAGGGCAATCCAGGTGACCCAGGAGGTTTTAAGCCAGTCCTAAGTTTAGAACGTCCTATCTCTAACCAGGTGGGCATTTTAATCCGACTGTTCATCCTTCAGTGCACATGCTCAAGGACACATAACTGGCCAGTGGAAGAACTGGGCCCAGTCCGTGGGCTTCCCACCCCCTCTTTTTTCCTTTATACCCTTGTTAATCAGTGTGGCTCTGGGAACAGCAGAGGCATTGCCCAGAAGTTCTCTAGAATTGCAGACTCTGGGGCCCCACACATCCTCAAACAGTGTCTTAGCAAGTCTTGAGCCAGAGTTTAACAAGATCCTCAGGGATCCACACACACATGAAGCTTGAGGAATGCCTAACTGTGCTATGCTTACACCCATGTTGTTAGCCTTAACTACTTCTCTGGCATGGTTTGGGTTAGTTTTTTTGTTTGTTTTAAGGCTTTTATGAACAGTATGATGCAAAGCTTTATAATGAAGGAGCTCTCAAGTGTGTTGCAGAGACCTAACAGAGCTTGGGAACACCAGGGGCAGCTTCTCAGAAAGAGGTGGCCTCTGAGCTGGGTTCCCAAGGATGAGGGGAGAGGTGTAACTTCCTCCCCTTAAAGCCTCATAATCCTGCATGGCCTTGCCTTGGGTCTTGTGTAATTGTTAACCTGTAGGCTAGATTTAAAGTTCCTTGAAGTTCTTTTCCATATTTATATTTCCAAAAGTCCTAGGAGATGACCTGCATACAGTATGCCCAGTAAATAACTTCAGTGGTATGGCCAGACTGGTCACACTTCACTCACTTGTAGACTGATGTGGGCTGTGGACAGGTGGGAGCCTCATGCAGCTGTGTACAGGGGCACTTCTCTCAATGTTTGAAGGCTAGAAGCTGCCTCTCAGATCCTTTTGATCCACTGGTGTCCTCAGAACAACGGAGGTGACATTCAGAGCTGTTCTGGGTCTCAGGCTTGGGAAGTCTGAGAGCTGTGTGTGCTGGCTGGGTCAGCTTCCCTTATGTCTCCTTCTACCTTCCCAG
Seq C2 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026:ENST00000295208:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACAGAGCTGGGTGTGTCC
R:
GTTGTTCCCTCTTCTCCTGGG
Band lengths:
343-2143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains