HsaALTD0007489-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000167395 | ZNF646
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr16:31074531-31081701:+
Coord C1 exon
chr16:31074531-31074631
Coord A exon
chr16:31074632-31074761
Coord C2 exon
chr16:31076246-31081701
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CCACTGCCCCCTCTTCCTAGGCC
3' ss Score
10.56
Exon sequences
Seq C1 exon
CCCTTCCCTCCCACCTCCCGGGAACCCTGGCTGAGTGTGCGTGTGTGGGAGCGCGAGAGCCCCCCGACAGCCACCCCTTGGGGCGCGCGGCTGCAGTTAGG
Seq A exon
GTAAGGGTCCCAGTGCGCAGGCGCGCTCTTGTTCGCGGTCCCCAACTGACGCGCCCGCGGCGGGAAGGAGAGGGGGCCGCCGGTGCGAGGTAGGCGTCCTGAGAGGAAATTGGCAGACGAGATGAGTGAG
Seq C2 exon
GCCTTGGCCCCTCCACCAGAGGAAGGTGCTGCCACGTGTCTGCTCCTTCTGAACCTCCAGGTTTCTGCTACGTTGCCCCATGGAGGACACACCCCCCTCACTCAGCTGCTCCGACTGTCAGCGCCACTTTCCCAGCCTCCCAGAGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAACCAGGACAGTGAGGAGGCTGACAGCATCCCTCGGCCCTACCGTTGTCAGCAGTGTGGGCGGGGCTACCGTCACCCCGGGAGCCTGGTTAACCATCGTCGGACCCACGAGACTGGCCTTTTCCCCTGTACCACCTGTGGCAAGGACTTCTCCAATCCCATGGCTCTCAAGAGCCATATGAGGACACATGCTCCTGAGGGCCGCCGCAGGCACAGGCCCCCACGCCCCAAGGAAGCCACTCCACACCTCCAGGGTGAGACGGTGTCCACTGACTCCTGGGGCCAAAGGCTTGGCTCTAGTGAAGGCTGGGAAAACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167395-0-2,1-2,2-2,3-2-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.2),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGCGTGTGTGGGAG
R:
TGGGAGATGGATGGAGCAGTT
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains