HsaINT0187994 @ hg38
Intron Retention
Gene
ENSG00000167395 | ZNF646
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr16:31074422-31081701:+
Coord C1 exon
chr16:31074422-31074631
Coord A exon
chr16:31074632-31076245
Coord C2 exon
chr16:31076246-31081701
Length
1614 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCACTGCCCCCTCTTCCTAGGCC
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGTAACAATAGGAAGTGTCCGTAGAGCTGGGAGTAGACTCCTGGCTCATGCCAGCTGCGCCCTCTTTTCTCTACCTCCTTCCTCTTCCCCCCTTCTCCTTTCCCTCTTTCCCTTCCCTCCCACCTCCCGGGAACCCTGGCTGAGTGTGCGTGTGTGGGAGCGCGAGAGCCCCCCGACAGCCACCCCTTGGGGCGCGCGGCTGCAGTTAGG
Seq A exon
GTAAGGGTCCCAGTGCGCAGGCGCGCTCTTGTTCGCGGTCCCCAACTGACGCGCCCGCGGCGGGAAGGAGAGGGGGCCGCCGGTGCGAGGTAGGCGTCCTGAGAGGAAATTGGCAGACGAGATGAGTGAGGTCAGAGGACTTCATTGGTGGTTGACTAGGGGAGGGGACTTTTGATCAAAGGGGCTTTGTGAGGTGAGAATTCCGGGGGCAGGTTCAGTGAAGGGGTTTACGGTCGGAGACAGTTGTACTGGGGTCCCATGGGAAGAAGAGTCAGAGTTGGAGAAGGACAAGACGATGTAGGGGGCATGAGAGAGCAAGGGCTTTGGGATGAAGACCGCCTCAGTCAGGGGGTTTGCTGTTACGTGAACTAGAATAACAGGCATTGCCGTGTGTTCTGAGGATTGAGTAACACAATGAATATAGTTAGCACAGTGCCTGGCACATGGTAATATAATACTCTTCATGAGTTGCTGTCATCATCAGTATTAAGAGAGGAGGCAGAAGAAAAAAATGAGAAAGACTGGTGAGGGTAAGATCAGGAGGCATGGGAGAGAAAAGGTAGGCAATGAAGTGACATTACAACCTGGTATTGATGTTATTCCCAAGATGGAAGATAGTTTGAGTTCAAGGGAAGTAGATAAAAGAAGTCGCTAAGAGAGTCTTTTGGGGTTTTTTGTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCTGTGGTGGGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTTCAGCCTCAGCCTCCTGAGTAGCTAGAATTACAGGTGCCCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTGGTCTTGAACTCCTGAACTCAGGTGATCCACCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCTGGCCCAGTTAAGAGAGTCTTAACTCTCTTAACTCTCTTGTCACAAGGAAAAGAGACCTTGTGACACTGAAATGACTCGGGGTGGTGGGGGAACAAGCCAGCCCTTTCCCTGAAGGAGGCCTCTAACCTCTCCTCTCAGGTCCTCAGCTATTAACTGGAGGAAACAGCTGCTTTTTCAGTGCTTCTCAGCTACTCTGTTTAGCTGAGAGATGAAGTAGGAAGATTTGGACTTCTCTTATTGAAAGGCCTAGAGAAGGTTTTGGTGTCCTTTTAAGATGTCACAGAAAATTTTTGTTTCAGGATTGTAGGGAGCAGATTCCTACTGTTCTTAAAGGACAGTAATGCCTTTTGAGTCTGGTCTGAAGAACATAACAGGTCTGTGATCAGAAGTAGGTTGCATCTCTCTCAACTTTAATTTCCTTAGCTATACCTGTAGGGATGACTTAAGCCTAGGGGAGCTCCTATATTTGGGAAGCTTGTGCACAGGGAAGCCTTAAATGATGGTGCCTGCAGATTGGATCTAGTAGAAATTAGGTCCTTGGGCATGGATGCTTGGGGAACCTCTCAGTGACCTCAGGTGAACTTGTTGCTCGTAGAGCCAAGAGGCGAAGTTAATTCAGGCCTTCCTTTTGACCACTGCCCCCTCTTCCTAG
Seq C2 exon
GCCTTGGCCCCTCCACCAGAGGAAGGTGCTGCCACGTGTCTGCTCCTTCTGAACCTCCAGGTTTCTGCTACGTTGCCCCATGGAGGACACACCCCCCTCACTCAGCTGCTCCGACTGTCAGCGCCACTTTCCCAGCCTCCCAGAGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAACCAGGACAGTGAGGAGGCTGACAGCATCCCTCGGCCCTACCGTTGTCAGCAGTGTGGGCGGGGCTACCGTCACCCCGGGAGCCTGGTTAACCATCGTCGGACCCACGAGACTGGCCTTTTCCCCTGTACCACCTGTGGCAAGGACTTCTCCAATCCCATGGCTCTCAAGAGCCATATGAGGACACATGCTCCTGAGGGCCGCCGCAGGCACAGGCCCCCACGCCCCAAGGAAGCCACTCCACACCTCCAGGGTGAGACGGTGTCCACTGACTCCTGGGGCCAAAGGCTTGGCTCTAGTGAAGGCTGGGAAAACCAGACAAAACATACAGAAGAGACACCTGACTGTGAATCTGTACCTGACCCCAGGGCAGCTTCGGGTACGTGGGAAGATCTGCCCACCAGACAAAGAGAAGGCTTGGCAAGCCACCCAGGTCCTGAGGATGGTGCAGACGGCTGGGGACCCTCCACTAACTCTGCCAGAGCCCCTCCTCTCCCCATCCCAGCCAGCAGCCTTCTTAGCAACTTGGAACAGTATCTGGCTGAATCAGTAGTGAACTTCACAGGGGGCCAGGAGCCCACCCAGTCCCCTCCTGCTGAGGAGGAGCGGCGGTACAAATGTAGTCAGTGTGGCAAGACCTACAAGCACGCCGGGAGCCTCACCAACCACCGCCAGAGCCACACGCTGGGCATCTACCCCTGTGCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCTCTGAAGAACCACTCTCGACTGCATGCCCAGTATCGGCCTTACCACTGTCCCCACTGCCCCCGTGTCTTCCGGCTCCCCCGGGAGCTGCTGGAACACCAGCAGTCCCATGAGGGTGAAAGGCAGGAGCCACGCTGGGAGGAGAAAGGGATGCCCACCACCAATGGGCACACAGATGAGAGCAGCCAGGACCAGCTCCCCAGTGCACAGATGCTGAATGGCTCTGCGGAGCTCAGCACCTCTGGGGAGCTGGAGGACAGTGGCCTGGAGGAATACCGGCCTTTCCGCTGTGGGGACTGTGGCCGTACTTACCGCCATGCTGGGAGCCTCATCAACCATCGAAAGAGCCACCAGACAGGTGTCTACCCCTGCTCACTCTGTTCTAAGCAGCTGTTCAATGCGGCTGCCCTCAAAAACCATGTGCGGGCTCATCACAGGCCCAGGCAAGGAGTTGGGGAAAATGGGCAGCCATCAGTCCCACCAGCTCCCCTGCTGCTGGCTGAGACCACCCACAAAGAGGAAGAGGACCCCACCACCACCCTGGACCATCGGCCCTATAAGTGCAGTGAGTGTGGTCGTGCTTACCGCCACCGGGGGAGCCTGGTGAACCATCGCCACAGCCATCGGACTGGAGAGTACCAGTGCTCACTCTGTCCCCGCAAGTACCCCAATCTCATGGCCCTGCGCAACCACGTGCGGGTACATTGCAAGGCTGCTCGCCGAAGTGCAGACATCGGGGCTGAGGGTGCCCCCAGCCACCTCAAGGTAGAACTCCCGCCTGACCCAGTGGAGGCAGAGGCAGCCCCGCACACAGATCAGGACCATGTGTGCAAACATGAAGAAGAGGCCACGGACATCACCCCAGCAGCAGACAAGACAGCAGCACATATCTGTAGCATCTGTGGGCTGCTCTTTGAAGACGCTGAGAGCCTTGAACGTCATGGCCTGACTCATGGGGCAGGGGAAAAGGAAAATAGCAGAACAGAGACCACAATGTCACCTCCTAGGGCCTTTGCCTGCCGAGACTGTGGAAAGAGCTATCGCCACTCAGGCAGCCTTATCAACCACAGGCAGACCCACCAGACAGGAGACTTCAGTTGTGGGGCCTGTGCCAAGCACTTCCACACCATGGCTGCCATGAAGAACCACTTGCGCCGGCACAGTCGGCGGCGGAGCAGGCGGCATCGGAAGCGGGCTGGCGGTGCCAGCGGTGGGAGAGAAGCCAAACTCCTGGCAGCGGAGAGCTGGACCCGGGAGCTAGAAGACAATGAAGGCCTGGAGTCTCCCCAAGACCCTTCAGGGGAAAGTCCTCATGGGGCTGAAGGCAACCTGGAAAGTGATGGGGACTGTTTGCAGGCTGAATCTGAAGGGGACAAATGTGGGCTTGAGAGGGATGAGACCCATTTCCAGGGTGATAAAGAGAGCGGAGGCACTGGGGAAGGACTGGAAAGGAAGGATGCCAGTTTACTTGACAACTTGGACATCCCAGGTGAGGAAGGTGGTGGCACTCACTTCTGCGATAGCCTCACTGGGGTGGATGAAGACCAGAAGCCAGCCACTGGCCAACCCAACTCCTCTTCCCACTCTGCCAATGCTGTCACTGGCTGGCAGGCTGGGGCCGCTCACACATGCTCTGACTGTGGGCATTCTTTCCCCCATGCCACTGGCCTGCTGAGCCACAGGCCCTGCCACCCACCAGGCATCTATCAGTGCTCCCTCTGCCCGAAGGAGTTTGACTCTCTGCCTGCCCTCCGCAGCCACTTCCAGAACCATAGGCCTGGGGAGGCGACCTCAGCACAGCCTTTCCTCTGCTGCCTCTGTGGCATGATCTTCCCTGGGCGGGCTGGCTACAGGCTTCACCGGCGCCAGGCCCACAGCTCCTCTGGCATGACTGAGGGCTCAGAGGAGGAGGGGGAAGAGGAAGGAGTGGCAGAGGCAGCCCCTGCACGCAGTCCACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCGGGAGGTGGAAGCGCTGGACAGTGCAGGGTATGGGCACATCTGTGGCTGCTGTGGTCAGACCTACGATGACCTGGGGAGCCTGGAGCGTCACCACCAAAGTCAGAGTTCTGGGACTACTGCAGACAAGGCTCCCAGCCCCTTGGGAGTGGCAGGTGATGCCATGGAGATGGTCGTGGACAGTGTCTTGGAGGACATAGTGAATTCTGTCTCTGGAGAGGGTGGAGATGCCAAGTCTCAAGAGGGAGCAGGCACCCCCTTGGGAGACAGCCTCTGCATCCAGGGTGGGGAAAGTTTGTTGGAGGCTCAGCCCCGCCCCTTCCGCTGCAACCAGTGTGGCAAGACCTATCGCCATGGGGGCAGCCTGGTGAACCACCGCAAGATCCACCAGACTGGAGACTTTCTCTGCCCTGTCTGCTCCCGCTGCTACCCCAACCTGGCTGCCTACCGTAATCATCTGCGGAACCACCCTCGCTGCAAAGGCTCTGAGCCCCAGGTTGGGCCCATCCCAGAGGCAGCAGGTAGCAGTGAGCTGCAGGTTGGGCCCATCCCAGAAGGAGGCAGCAACAAGCCCCAGCACATGGCAGAGGAGGGGCCGGGGCAAGCAGAAGTCGAGAAGCTCCAGGAAGAACTTAAAGTGGAGCCCCTGGAGGAAGTGGCCAGGGTGAAAGAAGAGGTGTGGGAGGAGACCACTGTGAAGGGGGAGGAGATAGAGCCCAGGCTGGAGACTGCCGAGAAGGGCTGCCAGACTGAAGCCAGCTCTGAGCGGCCCTTCAGCTGCGAGGTGTGTGGCCGATCCTACAAGCACGCCGGCAGCCTCATCAACCACCGGCAGAGCCACCAGACCGGCCACTTTGGCTGTCAGGCCTGCTCCAAGGGCTTCTCAAACCTCATGTCCCTCAAGAACCACCGGCGCATCCATGCAGATCCCCGACGTTTCCGCTGCAGCGAGTGTGGGAAGGCCTTCCGCCTGCGGAAACAGCTGGCCAGCCACCAGCGGGTCCACATGGAACGGCGTGGGGGTGGGGGCACCCGAAAGGCGACTCGGGAAGATCGGCCCTTCCGCTGTGGGCAGTGCGGGCGGACCTATCGCCACGCCGGCAGCCTCCTGAACCACCGGCGCAGCCACGAGACGGGCCAGTACAGCTGCCCCACCTGCCCCAAGACCTACTCCAACCGCATGGCCCTGAAGGACCACCAGAGGCTGCACTCAGAGAATCGGCGGCGACGGGCTGGACGGTCCAGGCGCACAGCTGTGCGTTGCGCCCTCTGTGGCCGCAGCTTCCCTGGCCGGGGATCTTTGGAGCGGCACCTGCGGGAGCATGAGGAGACAGAAAGGGAGCCAGCCAATGGCCAGGGAGGCCTGGATGGCACAGCGGCCAGTGAGGCGAACCTGACTGGCAGCCAGGGACTAGAGACCCAATTGGGTGGTGCTGAGCCAGTACCCCACTTGGAGGATGGAGTCCCAAGGCCAGGGGAGCGCAGTCAGAGCCCCATCAGGGCAGCAAGCTCAGAAGCCCCAGAGCCACTGTCCTGGGGTGCAGGGAAGGCAGGTGGGTGGCCGGTAGGTGGGGGACTGGGGAATCATAGTGGAGGCTGGGTTCCTCAGTTCCTAACTAGGTCAGAGGAGCCAGAGGACAGTGTCCACAGGAGTCCTTGCCACGCTGGTGACTGCCAGCTCAATGGACCTACTCTGAGTCACATGGATAGCTGGGACAACAGAGACAACAGCTCTCAGCTGCAGCCAGGGAGCCACTCCTCTTGCAGCCAGTGTGGCAAGACTTACTGCCAGTCAGGCAGCCTCTTGAACCACAACACCAACAAGACAGACCGACACTATTGCCTGCTCTGCTCCAAGGAGTTCTTAAATCCTGTGGCCACAAAGAGCCACAGCCACAACCACATAGACGCCCAGACCTTTGCCTGTCCTGACTGTGGCAAAGCCTTTGAGTCCCACCAGGAACTGGCCAGCCACCTGCAGGCTCATGCCCGGGGCCACAGCCAGGTGCCAGCCCAGATGGAGGAGGCCAGAGATCCCAAAGCCGGGACTGGGGAGGACCAGGTGGTTCTCCCTGGTCAAGGGAAAGCCCAGGAGGCCCCATCAGAAACCCCCAGAGGCCCAGGAGAGAGTGTGGAGAGAGCCAGGGGAGGACAAGCGGTGACGTCCATGGCGGCTGAGGACAAGGAGCGGCCCTTCCGCTGCACCCAGTGCGGGCGCTCCTACCGCCATGCTGGCAGCCTGCTGAACCACCAGAAGGCCCACACCACAGGGTTGTACCCGTGCTCCCTCTGTCCCAAACTTCTCCCTAACCTGCTGTCTCTTAAGAACCACAGCAGGACCCACACGGACCCCAAGCGCCACTGCTGCAGCATCTGTGGCAAGGCCTTTCGGACAGCTGCCCGGCTGGAGGGCCACGGGCGGGTCCATGCACCCCGGGAGGGGCCTTTCACCTGCCCCCATTGTCCCCGCCACTTCCGCCGCCGAATCAGCTTCGTGCAGCACCAGCAGCAGCACCAGGAGGAGTGGACGGTGGCCGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167395:ENST00000300850:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.2),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCCTCTTTTCTCTACCT
R:
CTCACTGTCCTGGTTGGGAGA
Band lengths:
351-1965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains