Special

MmuINT0179639 @ mm9

Intron Retention

Gene
ENSMUSG00000049739 | Zfp646
Description
zinc finger protein 646 [Source:MGI Symbol;Acc:MGI:3665412]
Coordinates
chr7:135021215-135027432:+
Coord C1 exon
chr7:135021215-135021621
Coord A exon
chr7:135021622-135022083
Coord C2 exon
chr7:135022084-135027432
Length
462 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTACTGTCCCCCCTTTCTAGGCC
3' ss Score
11.79
Exon sequences
Seq C1 exon
AGGGAATGAAAAGTGTTGGAGACAGCAAGGTAAGGTAGGTAGGGGATAGAAAAGGCAGAGAATAAAATGAACTTTCAACCTGAAATGGAATGGGATTAAATGTACTTAAAGGAAGTAAAACTAACGCCTAACAGGGAAACAGTGTGATGCTGAAAAGGCCAGGTTCATCCCTAAGAGGGCCTCTACCTTCTACAACACATAGGTGACCACTGAAGCCAGGTTCGTCCCTAAGAGGGCCTCTACCTTCTACAACACATAGGTGACCACTGAAGAAAGCAGCTGCTCTGCCATTCTTTTCAGACCACTCGGTTTAGCTGAAGAGTGAAGAAAGAAAGGTTGCACGTCTGTGTAAGGCCTGCCCAACAGTCGTGGCTGTCTCCTTCAATCTCAACTCTCAGGAGTCTGAG
Seq A exon
GTAGGAAAATTCATAAGTGTGAAACTAGTTTGGGCGACTGAGGGAATCCCAGAGCAGCTTGAACTTTACAGTGAGCTGAGACCATATCTCAAAAGCAAATAGTTCTGGTTCGTTGTTACAAAAACAAACACACACCTCATAGATTTTTGTTAGGTTGTCAGAATGATAGAGTGCACAGTCTGAAGATCAATAAGATCCATTATATATAACCTAAAAAACAAAATCAGTCTGTCTAGGCTCCAGATTTTATTTTCCTTATTTCTCTCAGGCTCTAGAGATGACTTAAACCTGGGGGAACATTTCTAGGAGTTTGTGCATAGCGAGGCTTTCTGAACCTCCAGACCTAAGAGAGAGCGGGTCCCTTGGCATGGATGTTTGGGGAACCTCTTTGCGACTTGCTTTAGTAACCAAGAAACAAAACTGACTCGATCCTTCCTTCTGACTACTGTCCCCCCTTTCTAG
Seq C2 exon
GCCTCAGCCCTTCTGCAGAGAGAATGCTGCTGCCACCTGTCTGTCCCTCCTGAGCCTCCAGGGGTTTTCTACCGCTTTGCCTCATGGAGGACATGCCCCTCTCATTCAGTTGCTCTGACTGTCAGCGCCACTTTCCTAACCTCCCAGAACTGGCACGGCATCGAGAACTGCGCCATTCATCTGCTAAGCAGGACGGGGAGGAAGCCGATGGCATCCCTCACCCCTATGGCAGTCACCCGGAGAACTTGGCCAACCATCAGAGGAACCATGAGACTCTTTTTTTCCCCTGTACCACCTGTGGCAAGGATTTTTCTAATCGCTTGGCCCTCCAGAGCCATATGAGGACTCATGCTCCTGAGAGCCACCGAAGGCACGGGCCTCCACATGCCATGGAAACCGCTCCACACCTTGGGAGTGAGACCATGGCTACTGACTCCTGGGGTCAGAGGCTTGGATCTGGGGAAGGCTGGGAAAATCAGACGAAGTTGGTACGAGAGACACATGACTGGGAATCTGGAGCTGACCCCAGGGCAGCGTCAGGGACGTGGGAAGATCCACCTACCAAACAAAGACAAGGCTTAGAAATGCAGCCAGATTCTAAAGGAGGTACGGCGGACTGGGTGCCCGCCGTCAGTTCCGAAGGAGCATCACCACTCCCCACTCCAGCGAGCAACCTTCTTAGCAATTTGGAACAGTATTTGGCTGAATCAGTAGTGAACTTCACAGAGGCCCAGGAGCCCACTGAGCCTCTTCCTACTGAGGGGGAGCGAAAGTACAGGTGCAGTGAGTGCGGGAAGACCTATAAGCATGCCGGGAGCCTCACCAACCACCGCCAGAGTCACACTCTGGGCATCTACCCTTGTTCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCCCTGAAGAACCACTCGAGACTCCATGCCCAGTATCGGCCTTACCACTGTCCTCACTGCCCCCGTGCCTTTCGGCTCCCCAGGGATCTGCTGGAACATCAGCAGTCCCATGAGGGGCTAAAGCAGGAACAACCATGGGAAGACAAAGAGATGCCTACCACAAATGGACACGCAGATGAGAGGAGTTGGGGTCAGCTATCTAAAACAGGGATGTTGAATGGTTCTGGGGAGCTCAGCTCTTCTGGACAGCTAGAAGATGGCGGCTCAGAGGAATATCGACCTTTCTGTTGTGGAGACTGTGGCCGTACCTACCGTCATGCAGGTAGTCTCATCAACCATCGAAAAAGCCACCAAACAGGTATCTACCCCTGTTCCATTTGTTCCAAGCAGCTATTCAATGCAGCTGCTCTGAAAAACCATATTCGTGCTCATCATAGACCCCGGCAAGGAGCTGGGGAAGGTGGTCAGTCATCAGTGTCCTCAACTGCTCTTACGTCAGCCGAGAATACTCCAAAAGTGGACGAGGTCCCCACTGCCAGCCTGGACCATCGTCCCTATAAGTGTAATGAGTGTGGTCGGGCTTACCGCCACAGAGGGAGCCTGGTGAACCACCGCCACAGCCACCGGACAGGAGAGTACCAGTGTTCACTTTGTCCTCGAAAATACCCCAACCTTATGGCTCTGCGCAACCATGTGCGGGTACATTGCAAGGCTACACGCCGAAGTACAGATCCAGGGACTGAAGGTTCACCCAGCCCTGTCAAGAAAGAACAACATGATCCAGTGGGAATGGAAGCAGCATTCCACGGAGATGAGGAACATGCATGCAAACGTGAAGAAGAGGCCACCAGTAACCCCTCAATGGCAGATAGGACAGTGCCACAGGTGTGTAGCATTTGTGGAATGTTGTTTGAAGATCTCAAAAGTCTCGAACATCATAGCGTGACCCACAGGGAAGGAGAAAAAAGCAGGACAGACAGCACGGTGTCACCAACTAGAACATTTGCTTGCCAAGACTGTGGCAAGAGCTATCGCCACTCAGGCAGCCTTATTAACCATAGGCAGACCCATCAGACAGGAGACTTCAGTTGTGGGGCCTGTGCCAAGCATTTCCATACCATGGCTGCGATGAAAAGCCATTTACGGCGTCACAGTCGGCAGTGGAACAGAAGGCGGCAGAAGCAAGATAGTGGTACAGGGGAAGTAGCCACGCTCCCACCTGGGGGCGCCTGGACCCTGAAGCTGGAAAACGACGAGGACCCAGATTCTTCCCAAGATCCTTTGGGAGAAAGTCCTTGTGAAACTGAAGACAACCTGGAAAGGGATGGGGACTGTTTGCAGGCTGGATCTAGAGGCAACGAATGTGTGCTTAAAAGGGAGGAAGCCTGTTTTCTGGGTGATAAAGAGGGCACTGAGGAAGGACTAGAAGAGAGAGAGGCCTGTTTCCTTGACGACCTAGGCACCCCAGGTGATGAGTGCAATGAAACTGGCTTCTGTGGTGGCCTCCCTGGGATGGACAGTGACCGGAAGAGGGGCATCTGCCACTCTGACTCCTCCTCCCACCCTGCTGACGCTGACACTGTCTGGAAGGCCGCAGCCACTCACACCTGTTCTGACTGTGGAGATTCTTTCTCCCATGCTGCTGGCCTGTTGAGCCATAGGTCCTGCCACCCTCCAGGCATCTATCAATGCTCTCTCTGTCCAAAGGAATTTGATTCTCTGCCTGCCCTTCGAAGTCACTTCCAGACCCATCGGCCAGGAGAGGTAGCCTCAGCACAGCCCTTCCTCTGCTGCCTGTGCGGTATGATCTTTCCTGGGAGGACTGGCTACAGGCGTCATCTGCGCCAGGCTCATGGAGCTTCTGCCATGACTGAGGGCTCAGAAGAAGAGGAGGAAGGCACAGCAGAAACAGCCTCTACCCATAGTCCTCCCCTGCAACTCTCAGAAGCAGAGCTGCTGAATCAACTGCAGCGTGAGGTGGAAGCTCTAGATGGAGCAGGTTATGGTCATATTTGTGGTTGCTGTGGTCAGACCTATGATGACCTGGGGAGCCTGGAGCGTCACCACCAAAGTCAAAGTTCTAGCAATAGGACAGAGAATGTTCCTAGCCATTTGGAAGGAGCAGGTGATGCAACAGAAATGGTTGCAGATCATGGCTTTGAGGGCACAGTGACCTCCGTCTCAGAAGAAGGTGGGGACATAAAGTCTGAAGAGGGAGTAGGTGGCACAGTTGCAGACAGCCTTTGCATGCAGGCTGGTGAAAGCTTTCTGGAGTCCCACCCTCGCCCTTTCCAATGTAACCAGTGTGGCAAGACCTATCGCCACGGAGGCAGCTTGGTAAACCACCGAAAGATCCACCAGACAGGTGATTTCATCTGTCCTGTCTGTTCCCGCTGCTACCCCAATCTGGCTGCCTACCGGAATCATCTGCGGAATCACCCTCGCTGCAAAGGCTCAGAGCCCCAAATGGGGCCCATCTCAGAAGCAGGAGGCTGCAGTGAGCCCCAGAATGCAGCAGAGGCAGGGCAGGAGCAGGCTGTCATAGGGCAACTCCAGGAAGAGCTTAAAGTGGAGCCCTTGGAGGAGCTGGCAGGTGTCAAAGAAGAAGTGTGGGAGGGGACCGCTGTAAAGGAAGAGGAGCTGGAGCAGGAGTTGGAGACAGGCTGTCAGACTGAGGTCACCTCGGAGCGGCCCTTTAGCTGTGAAGTGTGTGGCCGCACCTACAAGCATGCTGGCAGCCTTATCAATCACCGGCAGAGCCACCAGACTGGCCACTTTGGCTGCCAGGCCTGCTCCAAGGGTTTCTCAAACCTCATGTCACTCAAGAACCACCGGCGCATCCATGCAGACCCTCGACAGTTCCGCTGCAGTGAGTGTGGGAAAGCCTTTCGCCTGCGAAAGCAGCTGGCCAACCACCAGCGAGTCCATGCTGAGCGACGCAGGAGTAGGGGCACCCAGAAACTGACTCGTGAGGACCGGCCTTTCAGATGTGGGCAGTGTGGCCGGACTTACCGCCATGCTGGCAGTCTCATGAACCACCAGTGCAACCCTGAGGCCAGCCGTTACAGCTGCCCTTTCTGTTTTAAGACCTATTCCAACCGCACAGCCCTGAAAGACCATCAGAGGGTACATTCTGATAGTCAACAGCGGCGACAGTCAGGATGTCCCCAGAGGGCAGCAGCTGTACGTTGTACCCTATGTGGCTGTGGCTTTTCTGGCCAGGGATCTCTAGAGCAGCATCTACAGGAGCATGAGGACACCAAACTAGAGGTAGCCAGTGGCCAGGGAGGCCAACATGCTACAGAAGGCAGTGAGGAGAACCTTGATGACTGGGGACTGGAGGGCAGGTCAGATGGTACTGAGGTACTGCAGGTGGAACATGAAACCAAGAGGCCTGGGGGACACAGTCAGAGTCCCAGTAGCCCAGCGTGTTCAGGAGGCACAGAATCCACACAGCAGGTGGGGAAAGTAGATGGGAGTCAAGGAGACAGAGGACAAATGAACCACAATGGTGCCTGGGTTCTTCAGGATCAGTTAACCAAGCCAGAAGGCAAGTTGGAAGACACTGTCTCCAGGAATCCTTGTCACCTCTCTGAGAGCCAGTCCAATGGTCCTACTCTAAGATACAGGGATAGTTGGAAAGGTGCTGACAGCGGCTCTCAACTCCAACCAGAAAGCCACTGCTGCAGCCAGTGTGGCAAGGCCTACTGCCAACCTGATGGCCTCTTGAACCCCAGCATTAATGGGAAAGACTGTCACATTTGTCTGCTCTGTTCCAAAGAGTTCTTGAATCCTGTGACCACTGAGATCCACAACCACACTACTGCCCAGCGCTTTGCTTGTAGTAATTGTAGCAAAGTGTGTGAGTCCCACAGTGAACTGGCCACACACATGAAGACTCATGCTGTTGAGCACAGTCAGATGTCAGGTCAGATGGAGAAGACCAGAGGTCCACAGGCTGGGATGGCAGAGGTGGGTCCTCCTGGTCCAGGGAAAGCTCAGGAGGCCCCATCAGAACTTCCTGGAGACCCAGAGGAGAATGGGGTGCCAGCTAACGGAGGACAAGGAATACATTTCCCAGCAGCTGAAGACAAGGAGCGTCCCTTTTGCTGTGCTCAGTGTGGGCGTTCATACCGCCATGCCGGTAGCCTGCTGAACCACCAGAAGGCCCACACCATTGGACTCTACCCCTGTTCCCTGTGTCCCAAACTTCTGCCTAACCTGCTGTCTCTCAAGAACCACAGTCGGACCCACACGGACCCCAAGCGCTACAGCTGCAACATCTGTGGCAAGGCTTTCAGAACCGCTGCCCGGCTTCAGGGCCATGGACGGGTCCATGCACCCCAGGAGGGACCATTCACCTGTTCTCATTGTCCTCGCCGCTTCCGCCACCGAATCAGCTTTCTGCGACACCAGCAGCAGCACCAGGAAGAGTGGCCAGTGTCGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049739-Zfp646:NM_172749:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.517
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.5),PF138941=zf-C2H2_4=WD(100=1.4),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF128742=zf-met=WD(100=1.2),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000052641, ENSMUSP00000095627, ENSMUSP00000115499, ENSMUSP00000127025
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr16:31074632-31076245 
ALTERNATIVE
HsaINT0187994
(ZNF646)
Human
(hg19)
chr16:31087199-31087566 
HsaINT0187994
(ZNF646)
Rat
(rn6)
chr1:199322198-199323625 
Cow
(bosTau6)
chr25:27442690-27443042 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:22698867-22698909 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTGATGCTGAAAAGGCCAGG

				
R: 
CTCCATGAGGCAAAGCGGTAG

				
Band lengths: 
354-816

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"