HsaINT0187994 @ hg19
Intron Retention
Gene
ENSG00000167395 | ZNF646
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:29004]
Coordinates
chr16:31085743-31093022:+
Coord C1 exon
chr16:31085743-31085952
Coord A exon
chr16:31085953-31087566
Coord C2 exon
chr16:31087567-31093022
Length
1614 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CCACTGCCCCCTCTTCCTAGGCC
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGTAACAATAGGAAGTGTCCGTAGAGCTGGGAGTAGACTCCTGGCTCATGCCAGCTGCGCCCTCTTTTCTCTACCTCCTTCCTCTTCCCCCCTTCTCCTTTCCCTCTTTCCCTTCCCTCCCACCTCCCGGGAACCCTGGCTGAGTGTGCGTGTGTGGGAGCGCGAGAGCCCCCCGACAGCCACCCCTTGGGGCGCGCGGCTGCAGTTAGG
Seq A exon
GTAAGGGTCCCAGTGCGCAGGCGCGCTCTTGTTCGCGGTCCCCAACTGACGCGCCCGCGGCGGGAAGGAGAGGGGGCCGCCGGTGCGAGGTAGGCGTCCTGAGAGGAAATTGGCAGACGAGATGAGTGAGGTCAGAGGACTTCATTGGTGGTTGACTAGGGGAGGGGACTTTTGATCAAAGGGGCTTTGTGAGGTGAGAATTCCGGGGGCAGGTTCAGTGAAGGGGTTTACGGTCGGAGACAGTTGTACTGGGGTCCCATGGGAAGAAGAGTCAGAGTTGGAGAAGGACAAGACGATGTAGGGGGCATGAGAGAGCAAGGGCTTTGGGATGAAGACCGCCTCAGTCAGGGGGTTTGCTGTTACGTGAACTAGAATAACAGGCATTGCCGTGTGTTCTGAGGATTGAGTAACACAATGAATATAGTTAGCACAGTGCCTGGCACATGGTAATATAATACTCTTCATGAGTTGCTGTCATCATCAGTATTAAGAGAGGAGGCAGAAGAAAAAAATGAGAAAGACTGGTGAGGGTAAGATCAGGAGGCATGGGAGAGAAAAGGTAGGCAATGAAGTGACATTACAACCTGGTATTGATGTTATTCCCAAGATGGAAGATAGTTTGAGTTCAAGGGAAGTAGATAAAAGAAGTCGCTAAGAGAGTCTTTTGGGGTTTTTTGTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCTGTGGTGGGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTTCAGCCTCAGCCTCCTGAGTAGCTAGAATTACAGGTGCCCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTGGTCTTGAACTCCTGAACTCAGGTGATCCACCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCTGGCCCAGTTAAGAGAGTCTTAACTCTCTTAACTCTCTTGTCACAAGGAAAAGAGACCTTGTGACACTGAAATGACTCGGGGTGGTGGGGGAACAAGCCAGCCCTTTCCCTGAAGGAGGCCTCTAACCTCTCCTCTCAGGTCCTCAGCTATTAACTGGAGGAAACAGCTGCTTTTTCAGTGCTTCTCAGCTACTCTGTTTAGCTGAGAGATGAAGTAGGAAGATTTGGACTTCTCTTATTGAAAGGCCTAGAGAAGGTTTTGGTGTCCTTTTAAGATGTCACAGAAAATTTTTGTTTCAGGATTGTAGGGAGCAGATTCCTACTGTTCTTAAAGGACAGTAATGCCTTTTGAGTCTGGTCTGAAGAACATAACAGGTCTGTGATCAGAAGTAGGTTGCATCTCTCTCAACTTTAATTTCCTTAGCTATACCTGTAGGGATGACTTAAGCCTAGGGGAGCTCCTATATTTGGGAAGCTTGTGCACAGGGAAGCCTTAAATGATGGTGCCTGCAGATTGGATCTAGTAGAAATTAGGTCCTTGGGCATGGATGCTTGGGGAACCTCTCAGTGACCTCAGGTGAACTTGTTGCTCGTAGAGCCAAGAGGCGAAGTTAATTCAGGCCTTCCTTTTGACCACTGCCCCCTCTTCCTAG
Seq C2 exon
GCCTTGGCCCCTCCACCAGAGGAAGGTGCTGCCACGTGTCTGCTCCTTCTGAACCTCCAGGTTTCTGCTACGTTGCCCCATGGAGGACACACCCCCCTCACTCAGCTGCTCCGACTGTCAGCGCCACTTTCCCAGCCTCCCAGAGCTCTCTCGGCACCGAGAACTGCTCCATCCATCTCCCAACCAGGACAGTGAGGAGGCTGACAGCATCCCTCGGCCCTACCGTTGTCAGCAGTGTGGGCGGGGCTACCGTCACCCCGGGAGCCTGGTTAACCATCGTCGGACCCACGAGACTGGCCTTTTCCCCTGTACCACCTGTGGCAAGGACTTCTCCAATCCCATGGCTCTCAAGAGCCATATGAGGACACATGCTCCTGAGGGCCGCCGCAGGCACAGGCCCCCACGCCCCAAGGAAGCCACTCCACACCTCCAGGGTGAGACGGTGTCCACTGACTCCTGGGGCCAAAGGCTTGGCTCTAGTGAAGGCTGGGAAAACCAGACAAAACATACAGAAGAGACACCTGACTGTGAATCTGTACCTGACCCCAGGGCAGCTTCGGGTACGTGGGAAGATCTGCCCACCAGACAAAGAGAAGGCTTGGCAAGCCACCCAGGTCCTGAGGATGGTGCAGACGGCTGGGGACCCTCCACTAACTCTGCCAGAGCCCCTCCTCTCCCCATCCCAGCCAGCAGCCTTCTTAGCAACTTGGAACAGTATCTGGCTGAATCAGTAGTGAACTTCACAGGGGGCCAGGAGCCCACCCAGTCCCCTCCTGCTGAGGAGGAGCGGCGGTACAAATGTAGTCAGTGTGGCAAGACCTACAAGCACGCCGGGAGCCTCACCAACCACCGCCAGAGCCACACGCTGGGCATCTACCCCTGTGCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCTCTGAAGAACCACTCTCGACTGCATGCCCAGTATCGGCCTTACCACTGTCCCCACTGCCCCCGTGTCTTCCGGCTCCCCCGGGAGCTGCTGGAACACCAGCAGTCCCATGAGGGTGAAAGGCAGGAGCCACGCTGGGAGGAGAAAGGGATGCCCACCACCAATGGGCACACAGATGAGAGCAGCCAGGACCAGCTCCCCAGTGCACAGATGCTGAATGGCTCTGCGGAGCTCAGCACCTCTGGGGAGCTGGAGGACAGTGGCCTGGAGGAATACCGGCCTTTCCGCTGTGGGGACTGTGGCCGTACTTACCGCCATGCTGGGAGCCTCATCAACCATCGAAAGAGCCACCAGACAGGTGTCTACCCCTGCTCACTCTGTTCTAAGCAGCTGTTCAATGCGGCTGCCCTCAAAAACCATGTGCGGGCTCATCACAGGCCCAGGCAAGGAGTTGGGGAAAATGGGCAGCCATCAGTCCCACCAGCTCCCCTGCTGCTGGCTGAGACCACCCACAAAGAGGAAGAGGACCCCACCACCACCCTGGACCATCGGCCCTATAAGTGCAGTGAGTGTGGTCGTGCTTACCGCCACCGGGGGAGCCTGGTGAACCATCGCCACAGCCATCGGACTGGAGAGTACCAGTGCTCACTCTGTCCCCGCAAGTACCCCAATCTCATGGCCCTGCGCAACCACGTGCGGGTACATTGCAAGGCTGCTCGCCGAAGTGCAGACATCGGGGCTGAGGGTGCCCCCAGCCACCTCAAGGTAGAACTCCCGCCTGACCCAGTGGAGGCAGAGGCAGCCCCGCACACAGATCAGGACCATGTGTGCAAACATGAAGAAGAGGCCACGGACATCACCCCAGCAGCAGACAAGACAGCAGCACATATCTGTAGCATCTGTGGGCTGCTCTTTGAAGACGCTGAGAGCCTTGAACGTCATGGCCTGACTCATGGGGCAGGGGAAAAGGAAAATAGCAGAACAGAGACCACAATGTCACCTCCTAGGGCCTTTGCCTGCCGAGACTGTGGAAAGAGCTATCGCCACTCAGGCAGCCTTATCAACCACAGGCAGACCCACCAGACAGGAGACTTCAGTTGTGGGGCCTGTGCCAAGCACTTCCACACCATGGCTGCCATGAAGAACCACTTGCGCCGGCACAGTCGGCGGCGGAGCAGGCGGCATCGGAAGCGGGCTGGCGGTGCCAGCGGTGGGAGAGAAGCCAAACTCCTGGCAGCGGAGAGCTGGACCCGGGAGCTAGAAGACAATGAAGGCCTGGAGTCTCCCCAAGACCCTTCAGGGGAAAGTCCTCATGGGGCTGAAGGCAACCTGGAAAGTGATGGGGACTGTTTGCAGGCTGAATCTGAAGGGGACAAATGTGGGCTTGAGAGGGATGAGACCCATTTCCAGGGTGATAAAGAGAGCGGAGGCACTGGGGAAGGACTGGAAAGGAAGGATGCCAGTTTACTTGACAACTTGGACATCCCAGGTGAGGAAGGTGGTGGCACTCACTTCTGCGATAGCCTCACTGGGGTGGATGAAGACCAGAAGCCAGCCACTGGCCAACCCAACTCCTCTTCCCACTCTGCCAATGCTGTCACTGGCTGGCAGGCTGGGGCCGCTCACACATGCTCTGACTGTGGGCATTCTTTCCCCCATGCCACTGGCCTGCTGAGCCACAGGCCCTGCCACCCACCAGGCATCTATCAGTGCTCCCTCTGCCCGAAGGAGTTTGACTCTCTGCCTGCCCTCCGCAGCCACTTCCAGAACCATAGGCCTGGGGAGGCGACCTCAGCACAGCCTTTCCTCTGCTGCCTCTGTGGCATGATCTTCCCTGGGCGGGCTGGCTACAGGCTTCACCGGCGCCAGGCCCACAGCTCCTCTGGCATGACTGAGGGCTCAGAGGAGGAGGGGGAAGAGGAAGGAGTGGCAGAGGCAGCCCCTGCACGCAGTCCACCACTGCAGCTCTCGGAAGCAGAGCTGCTGAATCAGCTGCAGCGGGAGGTGGAAGCGCTGGACAGTGCAGGGTATGGGCACATCTGTGGCTGCTGTGGTCAGACCTACGATGACCTGGGGAGCCTGGAGCGTCACCACCAAAGTCAGAGTTCTGGGACTACTGCAGACAAGGCTCCCAGCCCCTTGGGAGTGGCAGGTGATGCCATGGAGATGGTCGTGGACAGTGTCTTGGAGGACATAGTGAATTCTGTCTCTGGAGAGGGTGGAGATGCCAAGTCTCAAGAGGGAGCAGGCACCCCCTTGGGAGACAGCCTCTGCATCCAGGGTGGGGAAAGTTTGTTGGAGGCTCAGCCCCGCCCCTTCCGCTGCAACCAGTGTGGCAAGACCTATCGCCATGGGGGCAGCCTGGTGAACCACCGCAAGATCCACCAGACTGGAGACTTTCTCTGCCCTGTCTGCTCCCGCTGCTACCCCAACCTGGCTGCCTACCGTAATCATCTGCGGAACCACCCTCGCTGCAAAGGCTCTGAGCCCCAGGTTGGGCCCATCCCAGAGGCAGCAGGTAGCAGTGAGCTGCAGGTTGGGCCCATCCCAGAAGGAGGCAGCAACAAGCCCCAGCACATGGCAGAGGAGGGGCCGGGGCAAGCAGAAGTCGAGAAGCTCCAGGAAGAACTTAAAGTGGAGCCCCTGGAGGAAGTGGCCAGGGTGAAAGAAGAGGTGTGGGAGGAGACCACTGTGAAGGGGGAGGAGATAGAGCCCAGGCTGGAGACTGCCGAGAAGGGCTGCCAGACTGAAGCCAGCTCTGAGCGGCCCTTCAGCTGCGAGGTGTGTGGCCGATCCTACAAGCACGCCGGCAGCCTCATCAACCACCGGCAGAGCCACCAGACCGGCCACTTTGGCTGTCAGGCCTGCTCCAAGGGCTTCTCAAACCTCATGTCCCTCAAGAACCACCGGCGCATCCATGCAGATCCCCGACGTTTCCGCTGCAGCGAGTGTGGGAAGGCCTTCCGCCTGCGGAAACAGCTGGCCAGCCACCAGCGGGTCCACATGGAACGGCGTGGGGGTGGGGGCACCCGAAAGGCGACTCGGGAAGATCGGCCCTTCCGCTGTGGGCAGTGCGGGCGGACCTATCGCCACGCCGGCAGCCTCCTGAACCACCGGCGCAGCCACGAGACGGGCCAGTACAGCTGCCCCACCTGCCCCAAGACCTACTCCAACCGCATGGCCCTGAAGGACCACCAGAGGCTGCACTCAGAGAATCGGCGGCGACGGGCTGGACGGTCCAGGCGCACAGCTGTGCGTTGCGCCCTCTGTGGCCGCAGCTTCCCTGGCCGGGGATCTTTGGAGCGGCACCTGCGGGAGCATGAGGAGACAGAAAGGGAGCCAGCCAATGGCCAGGGAGGCCTGGATGGCACAGCGGCCAGTGAGGCGAACCTGACTGGCAGCCAGGGACTAGAGACCCAATTGGGTGGTGCTGAGCCAGTACCCCACTTGGAGGATGGAGTCCCAAGGCCAGGGGAGCGCAGTCAGAGCCCCATCAGGGCAGCAAGCTCAGAAGCCCCAGAGCCACTGTCCTGGGGTGCAGGGAAGGCAGGTGGGTGGCCGGTAGGTGGGGGACTGGGGAATCATAGTGGAGGCTGGGTTCCTCAGTTCCTAACTAGGTCAGAGGAGCCAGAGGACAGTGTCCACAGGAGTCCTTGCCACGCTGGTGACTGCCAGCTCAATGGACCTACTCTGAGTCACATGGATAGCTGGGACAACAGAGACAACAGCTCTCAGCTGCAGCCAGGGAGCCACTCCTCTTGCAGCCAGTGTGGCAAGACTTACTGCCAGTCAGGCAGCCTCTTGAACCACAACACCAACAAGACAGACCGACACTATTGCCTGCTCTGCTCCAAGGAGTTCTTAAATCCTGTGGCCACAAAGAGCCACAGCCACAACCACATAGACGCCCAGACCTTTGCCTGTCCTGACTGTGGCAAAGCCTTTGAGTCCCACCAGGAACTGGCCAGCCACCTGCAGGCTCATGCCCGGGGCCACAGCCAGGTGCCAGCCCAGATGGAGGAGGCCAGAGATCCCAAAGCCGGGACTGGGGAGGACCAGGTGGTTCTCCCTGGTCAAGGGAAAGCCCAGGAGGCCCCATCAGAAACCCCCAGAGGCCCAGGAGAGAGTGTGGAGAGAGCCAGGGGAGGACAAGCGGTGACGTCCATGGCGGCTGAGGACAAGGAGCGGCCCTTCCGCTGCACCCAGTGCGGGCGCTCCTACCGCCATGCTGGCAGCCTGCTGAACCACCAGAAGGCCCACACCACAGGGTTGTACCCGTGCTCCCTCTGTCCCAAACTTCTCCCTAACCTGCTGTCTCTTAAGAACCACAGCAGGACCCACACGGACCCCAAGCGCCACTGCTGCAGCATCTGTGGCAAGGCCTTTCGGACAGCTGCCCGGCTGGAGGGCCACGGGCGGGTCCATGCACCCCGGGAGGGGCCTTTCACCTGCCCCCATTGTCCCCGCCACTTCCGCCGCCGAATCAGCTTCGTGCAGCACCAGCAGCAGCACCAGGAGGAGTGGACGGTGGCCGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167395-ZNF646:NM_014699:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.2),PF138941=zf-C2H2_4=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0172213=BolA=WD(100=3.2),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5),PF0009621=zf-C2H2=WD(100=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCCTCTTTTCTCTACCT
R:
CTCACTGTCCTGGTTGGGAGA
Band lengths:
351-1965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)