MmuINT0179639 @ mm10
Intron Retention
Gene
ENSMUSG00000049739 | Zfp646
Description
zinc finger protein 646 [Source:MGI Symbol;Acc:MGI:3665412]
Coordinates
chr7:127877701-127883918:+
Coord C1 exon
chr7:127877701-127878107
Coord A exon
chr7:127878108-127878569
Coord C2 exon
chr7:127878570-127883918
Length
462 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTACTGTCCCCCCTTTCTAGGCC
3' ss Score
11.79
Exon sequences
Seq C1 exon
AGGGAATGAAAAGTGTTGGAGACAGCAAGGTAAGGTAGGTAGGGGATAGAAAAGGCAGAGAATAAAATGAACTTTCAACCTGAAATGGAATGGGATTAAATGTACTTAAAGGAAGTAAAACTAACGCCTAACAGGGAAACAGTGTGATGCTGAAAAGGCCAGGTTCATCCCTAAGAGGGCCTCTACCTTCTACAACACATAGGTGACCACTGAAGCCAGGTTCGTCCCTAAGAGGGCCTCTACCTTCTACAACACATAGGTGACCACTGAAGAAAGCAGCTGCTCTGCCATTCTTTTCAGACCACTCGGTTTAGCTGAAGAGTGAAGAAAGAAAGGTTGCACGTCTGTGTAAGGCCTGCCCAACAGTCGTGGCTGTCTCCTTCAATCTCAACTCTCAGGAGTCTGAG
Seq A exon
GTAGGAAAATTCATAAGTGTGAAACTAGTTTGGGCGACTGAGGGAATCCCAGAGCAGCTTGAACTTTACAGTGAGCTGAGACCATATCTCAAAAGCAAATAGTTCTGGTTCGTTGTTACAAAAACAAACACACACCTCATAGATTTTTGTTAGGTTGTCAGAATGATAGAGTGCACAGTCTGAAGATCAATAAGATCCATTATATATAACCTAAAAAACAAAATCAGTCTGTCTAGGCTCCAGATTTTATTTTCCTTATTTCTCTCAGGCTCTAGAGATGACTTAAACCTGGGGGAACATTTCTAGGAGTTTGTGCATAGCGAGGCTTTCTGAACCTCCAGACCTAAGAGAGAGCGGGTCCCTTGGCATGGATGTTTGGGGAACCTCTTTGCGACTTGCTTTAGTAACCAAGAAACAAAACTGACTCGATCCTTCCTTCTGACTACTGTCCCCCCTTTCTAG
Seq C2 exon
GCCTCAGCCCTTCTGCAGAGAGAATGCTGCTGCCACCTGTCTGTCCCTCCTGAGCCTCCAGGGGTTTTCTACCGCTTTGCCTCATGGAGGACATGCCCCTCTCATTCAGTTGCTCTGACTGTCAGCGCCACTTTCCTAACCTCCCAGAACTGGCACGGCATCGAGAACTGCGCCATTCATCTGCTAAGCAGGACGGGGAGGAAGCCGATGGCATCCCTCACCCCTATGGCAGTCACCCGGAGAACTTGGCCAACCATCAGAGGAACCATGAGACTCTTTTTTTCCCCTGTACCACCTGTGGCAAGGATTTTTCTAATCGCTTGGCCCTCCAGAGCCATATGAGGACTCATGCTCCTGAGAGCCACCGAAGGCACGGGCCTCCACATGCCATGGAAACCGCTCCACACCTTGGGAGTGAGACCATGGCTACTGACTCCTGGGGTCAGAGGCTTGGATCTGGGGAAGGCTGGGAAAATCAGACGAAGTTGGTACGAGAGACACATGACTGGGAATCTGGAGCTGACCCCAGGGCAGCGTCAGGGACGTGGGAAGATCCACCTACCAAACAAAGACAAGGCTTAGAAATGCAGCCAGATTCTAAAGGAGGTACGGCGGACTGGGTGCCCGCCGTCAGTTCCGAAGGAGCATCACCACTCCCCACTCCAGCGAGCAACCTTCTTAGCAATTTGGAACAGTATTTGGCTGAATCAGTAGTGAACTTCACAGAGGCCCAGGAGCCCACTGAGCCTCTTCCTACTGAGGGGGAGCGAAAGTACAGGTGCAGTGAGTGCGGGAAGACCTATAAGCATGCCGGGAGCCTCACCAACCACCGCCAGAGTCACACTCTGGGCATCTACCCTTGTTCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCCCTGAAGAACCACTCGAGACTCCATGCCCAGTATCGGCCTTACCACTGTCCTCACTGCCCCCGTGCCTTTCGGCTCCCCAGGGATCTGCTGGAACATCAGCAGTCCCATGAGGGGCTAAAGCAGGAACAACCATGGGAAGACAAAGAGATGCCTACCACAAATGGACACGCAGATGAGAGGAGTTGGGGTCAGCTATCTAAAACAGGGATGTTGAATGGTTCTGGGGAGCTCAGCTCTTCTGGACAGCTAGAAGATGGCGGCTCAGAGGAATATCGACCTTTCTGTTGTGGAGACTGTGGCCGTACCTACCGTCATGCAGGTAGTCTCATCAACCATCGAAAAAGCCACCAAACAGGTATCTACCCCTGTTCCATTTGTTCCAAGCAGCTATTCAATGCAGCTGCTCTGAAAAACCATATTCGTGCTCATCATAGACCCCGGCAAGGAGCTGGGGAAGGTGGTCAGTCATCAGTGTCCTCAACTGCTCTTACGTCAGCCGAGAATACTCCAAAAGTGGACGAGGTCCCCACTGCCAGCCTGGACCATCGTCCCTATAAGTGTAATGAGTGTGGTCGGGCTTACCGCCACAGAGGGAGCCTGGTGAACCACCGCCACAGCCACCGGACAGGAGAGTACCAGTGTTCACTTTGTCCTCGAAAATACCCCAACCTTATGGCTCTGCGCAACCATGTGCGGGTACATTGCAAGGCTACACGCCGAAGTACAGATCCAGGGACTGAAGGTTCACCCAGCCCTGTCAAGAAAGAACAACATGATCCAGTGGGAATGGAAGCAGCATTCCACGGAGATGAGGAACATGCATGCAAACGTGAAGAAGAGGCCACCAGTAACCCCTCAATGGCAGATAGGACAGTGCCACAGGTGTGTAGCATTTGTGGAATGTTGTTTGAAGATCTCAAAAGTCTCGAACATCATAGCGTGACCCACAGGGAAGGAGAAAAAAGCAGGACAGACAGCACGGTGTCACCAACTAGAACATTTGCTTGCCAAGACTGTGGCAAGAGCTATCGCCACTCAGGCAGCCTTATTAACCATAGGCAGACCCATCAGACAGGAGACTTCAGTTGTGGGGCCTGTGCCAAGCATTTCCATACCATGGCTGCGATGAAAAGCCATTTACGGCGTCACAGTCGGCAGTGGAACAGAAGGCGGCAGAAGCAAGATAGTGGTACAGGGGAAGTAGCCACGCTCCCACCTGGGGGCGCCTGGACCCTGAAGCTGGAAAACGACGAGGACCCAGATTCTTCCCAAGATCCTTTGGGAGAAAGTCCTTGTGAAACTGAAGACAACCTGGAAAGGGATGGGGACTGTTTGCAGGCTGGATCTAGAGGCAACGAATGTGTGCTTAAAAGGGAGGAAGCCTGTTTTCTGGGTGATAAAGAGGGCACTGAGGAAGGACTAGAAGAGAGAGAGGCCTGTTTCCTTGACGACCTAGGCACCCCAGGTGATGAGTGCAATGAAACTGGCTTCTGTGGTGGCCTCCCTGGGATGGACAGTGACCGGAAGAGGGGCATCTGCCACTCTGACTCCTCCTCCCACCCTGCTGACGCTGACACTGTCTGGAAGGCCGCAGCCACTCACACCTGTTCTGACTGTGGAGATTCTTTCTCCCATGCTGCTGGCCTGTTGAGCCATAGGTCCTGCCACCCTCCAGGCATCTATCAATGCTCTCTCTGTCCAAAGGAATTTGATTCTCTGCCTGCCCTTCGAAGTCACTTCCAGACCCATCGGCCAGGAGAGGTAGCCTCAGCACAGCCCTTCCTCTGCTGCCTGTGCGGTATGATCTTTCCTGGGAGGACTGGCTACAGGCGTCATCTGCGCCAGGCTCATGGAGCTTCTGCCATGACTGAGGGCTCAGAAGAAGAGGAGGAAGGCACAGCAGAAACAGCCTCTACCCATAGTCCTCCCCTGCAACTCTCAGAAGCAGAGCTGCTGAATCAACTGCAGCGTGAGGTGGAAGCTCTAGATGGAGCAGGTTATGGTCATATTTGTGGTTGCTGTGGTCAGACCTATGATGACCTGGGGAGCCTGGAGCGTCACCACCAAAGTCAAAGTTCTAGCAATAGGACAGAGAATGTTCCTAGCCATTTGGAAGGAGCAGGTGATGCAACAGAAATGGTTGCAGATCATGGCTTTGAGGGCACAGTGACCTCCGTCTCAGAAGAAGGTGGGGACATAAAGTCTGAAGAGGGAGTAGGTGGCACAGTTGCAGACAGCCTTTGCATGCAGGCTGGTGAAAGCTTTCTGGAGTCCCACCCTCGCCCTTTCCAATGTAACCAGTGTGGCAAGACCTATCGCCACGGAGGCAGCTTGGTAAACCACCGAAAGATCCACCAGACAGGTGATTTCATCTGTCCTGTCTGTTCCCGCTGCTACCCCAATCTGGCTGCCTACCGGAATCATCTGCGGAATCACCCTCGCTGCAAAGGCTCAGAGCCCCAAATGGGGCCCATCTCAGAAGCAGGAGGCTGCAGTGAGCCCCAGAATGCAGCAGAGGCAGGGCAGGAGCAGGCTGTCATAGGGCAACTCCAGGAAGAGCTTAAAGTGGAGCCCTTGGAGGAGCTGGCAGGTGTCAAAGAAGAAGTGTGGGAGGGGACCGCTGTAAAGGAAGAGGAGCTGGAGCAGGAGTTGGAGACAGGCTGTCAGACTGAGGTCACCTCGGAGCGGCCCTTTAGCTGTGAAGTGTGTGGCCGCACCTACAAGCATGCTGGCAGCCTTATCAATCACCGGCAGAGCCACCAGACTGGCCACTTTGGCTGCCAGGCCTGCTCCAAGGGTTTCTCAAACCTCATGTCACTCAAGAACCACCGGCGCATCCATGCAGACCCTCGACAGTTCCGCTGCAGTGAGTGTGGGAAAGCCTTTCGCCTGCGAAAGCAGCTGGCCAACCACCAGCGAGTCCATGCTGAGCGACGCAGGAGTAGGGGCACCCAGAAACTGACTCGTGAGGACCGGCCTTTCAGATGTGGGCAGTGTGGCCGGACTTACCGCCATGCTGGCAGTCTCATGAACCACCAGTGCAACCCTGAGGCCAGCCGTTACAGCTGCCCTTTCTGTTTTAAGACCTATTCCAACCGCACAGCCCTGAAAGACCATCAGAGGGTACATTCTGATAGTCAACAGCGGCGACAGTCAGGATGTCCCCAGAGGGCAGCAGCTGTACGTTGTACCCTATGTGGCTGTGGCTTTTCTGGCCAGGGATCTCTAGAGCAGCATCTACAGGAGCATGAGGACACCAAACTAGAGGTAGCCAGTGGCCAGGGAGGCCAACATGCTACAGAAGGCAGTGAGGAGAACCTTGATGACTGGGGACTGGAGGGCAGGTCAGATGGTACTGAGGTACTGCAGGTGGAACATGAAACCAAGAGGCCTGGGGGACACAGTCAGAGTCCCAGTAGCCCAGCGTGTTCAGGAGGCACAGAATCCACACAGCAGGTGGGGAAAGTAGATGGGAGTCAAGGAGACAGAGGACAAATGAACCACAATGGTGCCTGGGTTCTTCAGGATCAGTTAACCAAGCCAGAAGGCAAGTTGGAAGACACTGTCTCCAGGAATCCTTGTCACCTCTCTGAGAGCCAGTCCAATGGTCCTACTCTAAGATACAGGGATAGTTGGAAAGGTGCTGACAGCGGCTCTCAACTCCAACCAGAAAGCCACTGCTGCAGCCAGTGTGGCAAGGCCTACTGCCAACCTGATGGCCTCTTGAACCCCAGCATTAATGGGAAAGACTGTCACATTTGTCTGCTCTGTTCCAAAGAGTTCTTGAATCCTGTGACCACTGAGATCCACAACCACACTACTGCCCAGCGCTTTGCTTGTAGTAATTGTAGCAAAGTGTGTGAGTCCCACAGTGAACTGGCCACACACATGAAGACTCATGCTGTTGAGCACAGTCAGATGTCAGGTCAGATGGAGAAGACCAGAGGTCCACAGGCTGGGATGGCAGAGGTGGGTCCTCCTGGTCCAGGGAAAGCTCAGGAGGCCCCATCAGAACTTCCTGGAGACCCAGAGGAGAATGGGGTGCCAGCTAACGGAGGACAAGGAATACATTTCCCAGCAGCTGAAGACAAGGAGCGTCCCTTTTGCTGTGCTCAGTGTGGGCGTTCATACCGCCATGCCGGTAGCCTGCTGAACCACCAGAAGGCCCACACCATTGGACTCTACCCCTGTTCCCTGTGTCCCAAACTTCTGCCTAACCTGCTGTCTCTCAAGAACCACAGTCGGACCCACACGGACCCCAAGCGCTACAGCTGCAACATCTGTGGCAAGGCTTTCAGAACCGCTGCCCGGCTTCAGGGCCATGGACGGGTCCATGCACCCCAGGAGGGACCATTCACCTGTTCTCATTGTCCTCGCCGCTTCCGCCACCGAATCAGCTTTCTGCGACACCAGCAGCAGCACCAGGAAGAGTGGCCAGTGTCGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049739:ENSMUST00000050383:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.513
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF134651=zf-H2C2_2=WD(100=1.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGCTGAAAAGGCCAGG
R:
CTCCATGAGGCAAAGCGGTAG
Band lengths:
354-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types