HsaALTD0007496-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147121 | ZNF673
Description
zinc finger family member 673 [Source:HGNC Symbol;Acc:26007]
Coordinates
chrX:46322633-46330620:+
Coord C1 exon
chrX:46322633-46322728
Coord A exon
NA
Coord C2 exon
chrX:46330577-46330620
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGTCTGTTTCTCTTTCAGATG
3' ss Score
14.34
Exon sequences
Seq C1 exon
GGTATCTAGTTGCGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGGCAGATGGGGGGACCCCGGTACGGACCTGTGCAG
Seq A exon
NA
Seq C2 exon
ATGTATCCATTTTTGCCTCATGTATTTTGAAGTGCTGTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147121-9-9,10-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGGACCAGGTGAAGAGT
R:
AACAGCACTTCAAAATACATGAGGC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)