HsaEX0074160 @ hg19
Exon Skipping
Gene
ENSG00000147121 | ZNF673
Description
zinc finger family member 673 [Source:HGNC Symbol;Acc:26007]
Coordinates
chrX:46322633-46331961:+
Coord C1 exon
chrX:46322633-46322743
Coord A exon
chrX:46330577-46330620
Coord C2 exon
chrX:46331460-46331961
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTTTCTCTTTCAGATG
3' ss Score
14.34
5' ss Seq
TAGGTACAT
5' ss Score
4.36
Exon sequences
Seq C1 exon
GGTATCTAGTTGCGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGGCAGATGGGGGGACCCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAG
Seq A exon
ATGTATCCATTTTTGCCTCATGTATTTTGAAGTGCTGTTATTAG
Seq C2 exon
TGAGAGTTATTTTCCATGGAAATTCTGTGTACCCTAAGCTATGAAAGCATCACTGCAGAACTATTTGGATTGCCACTGCTGGGGCCCACTGGTTTCACTAATGCAGGAACAATTTATAGGTGAATTTATCAACTTCGGGGGTTTTGTATTATACTTCAAATGTCCATTTGGAATGCACTCCTACATGTGGTACAGGACTGTGGTTCTGACTTCTTGTAAGTAACCCCTGATTCTTCTTAACATTTTCATTAGCCAGTGGGTGACATCTTTCTAGTTCCTATTTTACACACAGAGATGTCCTTTGTGACTCCCAGCTTTAAGCAGGTAGCTCAATTCTAATTCTCTGCACATTTGTGCCCTGTGGCCTAGAATTCACCTCACACTCATGATTAGAGCCTTAGTCCCCCAACTGCAAAGCCACACAGCTTCAATTTCTGTTCACTCCCTCACTTTAAATTTCTTCTTCATTTTTGTCACATAATAAATTTATTTTCTGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147121-'10-10,'10-9,12-10
Average complexity
C3
Mappability confidence:
78%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCCTGGATGGCAGATGG
R:
CCCAGCAGTGGCAATCCAAAT
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)