HsaALTD0007497-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000251192 | ZNF674
Description
zinc finger protein 674 [Source:HGNC Symbol;Acc:17625]
Coordinates
chrX:46382428-46387880:-
Coord C1 exon
chrX:46387785-46387880
Coord A exon
chrX:46387770-46387784
Coord C2 exon
chrX:46382428-46382560
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTATTTCTTTGAGATAGAAA
3' ss Score
2.17
Exon sequences
Seq C1 exon
GGCATCTAGTTGGGAAGCCAGATGTGATCTTCAGGTTGGGACCAGGTGACGAGTCCTGGATGGCAGATGGAGGGACCCCGGTACGGACCTGTGCAG
Seq A exon
GTGAGGACAGGCCAG
Seq C2 exon
AAAGAAATCCTTATTGATTACTATATCTTGCATACAGAAGAGCATTTAGAACACGTGCGTACTTTTCAGAAGAAATATATAGCTAACACCTGGATAATCACCACTCAGGTTGAGAACTACGACTCTACCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000251192-4-8,5-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTGGATGGCAGATGGA
R:
ACGCACGTGTTCTAAATGCTCT
Band lengths:
106-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)