HsaALTD0007503-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr8:143692245-143693830:+
Coord C1 exon
chr8:143692245-143692291
Coord A exon
chr8:143692292-143692330
Coord C2 exon
chr8:143693671-143693830
Length
39 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
GGTGTCTGTTCCTTCCACAGGGG
3' ss Score
10.81
Exon sequences
Seq C1 exon
AGTGGGATGGAGCAGCTATGTGAACACGAGCCCTGGGAGGTCCCCGG
Seq A exon
GTATGTGGAGTCCCCGACTGTGGAGTGTCAGGTTCCTAG
Seq C2 exon
GGGCAAGGAAGTCTGCAGACCCCAAGAGACCTTGTGATCATCCAGCTTGGGCTCACAAGAAAACCCACGTGCGGCGAGAAAGAGCCAGGGAAGGAAGCAGCTTTAGGAAGGGCTTCAGGCTGGACACGGATGACGGGCAGCTTCCCAGAGCTGCTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-26-20,27-20,28-20,29-20-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF051298=Elf1=WD(100=23.3),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=8.7),PF0009621=zf-C2H2=WD(100=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGATGGAGCAGCTATGT
R:
GTGGGTTTTCTTGTGAGCCCA
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains