HsaEX0074236 @ hg38
Exon Skipping
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr8:143690057-143695385:+
Coord C1 exon
chr8:143690057-143690123
Coord A exon
chr8:143691073-143691232
Coord C2 exon
chr8:143693671-143695385
Length
160 bp
Sequences
Splice sites
3' ss Seq
GGGAGCTGTGTGTGTTGCAGGAG
3' ss Score
6.9
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAG
Seq A exon
GAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGGGTGAGCACGGGCTGAGCGCAGCGTGAGCACAGG
Seq C2 exon
GGGCAAGGAAGTCTGCAGACCCCAAGAGACCTTGTGATCATCCAGCTTGGGCTCACAAGAAAACCCACGTGCGGCGAGAAAGAGCCAGGGAAGGAAGCAGCTTTAGGAAGGGCTTCAGGCTGGACACGGATGACGGGCAGCTTCCCAGAGCTGCTCCAGAAAGGACAGACGCCAAGCCCACGGCTTTCCCGTGTCAGGTGCTCACGCAGCGTTGTGGGCGGCGGCCGGGCCGCAGAGAGCGCCGGAAGCAGCGCGCAGTAGAGCTGTCATTCATCTGCGGCACGTGCGGGAAGGCGCTCAGCTGCCACAGCCGGCTGCTCGCTCACCAGACGGTGCACACGGGAACCAAGGCCTTCGAGTGCCCCGAGTGCGGCCAGACCTTCCGGTGGGCTTCAAACCTGCAGCGCCACCAGAAGAACCACACGCGCGAGAAGCCCTTCTGCTGCGAGGCCTGCGGGCAGGCGTTCAGCCTGAAGGACCGCCTGGCTCAGCACCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135_MULTIEX1-8/11=7-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.305
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF051298=Elf1=WD(100=23.3),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=8.7),PF0009621=zf-C2H2=WD(100=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTGCTTCCCCAGAG
R:
GAGCACCTGACACGGGAAAG
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development