BtaEX6074324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74562655-74568409:-
Coord C1 exon
chr17:74568339-74568409
Coord A exon
chr17:74563042-74563168
Coord C2 exon
chr17:74562655-74562792
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAACACGTGTGTCCTTCCAGGAG
3' ss Score
8.61
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATCCTGCTCGTCCCCTCAAAGAGATTGCAGAAGATACATTGCCTCGGGGTCTCCTGGAAGCCAGGTCTGAG
Seq A exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
Seq C2 exon
GGCCTCCGGTCTGCAAGCCAGACGTCATCTCCCACCTGGAGCGAGGCGAGGAGCCATGGCAGGCGCCCAGAGACGGGCCTGCGGGGCCCGATCCAGGTGAGTGGGGCGCGGAGGCGGAGCCCCTCCCCGCCGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257-'4-6,'4-5,15-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.326 C2=0.851
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSBTAT00000029408fB8061
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTCGTCCCCTCAAAG
R:
GCCCCACTCACCTGGATCG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]