HsaINT0188195 @ hg38
Intron Retention
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr8:143690057-143691199:+
Coord C1 exon
chr8:143690057-143690123
Coord A exon
chr8:143690124-143691072
Coord C2 exon
chr8:143691073-143691199
Length
949 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGAGCTGTGTGTGTTGCAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAG
Seq A exon
GTGAGCCCTGCTGCTGCCGAGCGCAGCCTCCCTTCTGCCCTGCTGGCTGCCTGAGACCCCAGCACACACGCGGGGAGGGTCTGTGGCAGTGGCTTCCCAGGCACTGTGCCCGTGTCTGCCTTTCTGCCTTCTCTCTTAAGGGGTGGGGAAAGAAAAAGAAAATTGGGGCCAGGCGCAATGCCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGTGGATCTCGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCACGCACCTGTAGGCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACCACTCCAGCCTGGTGACAGAGCAAGACTCCGTCTCAAAAAAGAAAAAAAAAAAGAAAAGAAAATTGGATTCATTGACACTAGGAGAGTAGTGGCTGTTGTAGGAAAGTAGACTAGATTCTCTTAGTCCACTAGAGCTACCGTAACCAAACATGACACAGTGGGTGGTTTACACACATGCACTTCCTCTGTTCCAAAGGCTGACGTCCAAGATCAGATGCTGCAGATCTGGTTTCTGGTGGGGGCCACTATTGTGCTGTGTTCACGCGTGTGCGGGGAGGGAGCCGGGGGGCTCTCTGGAGTCTCCTGTGAGGACCAGGTCCATGGGTCAGGGCCCCTCCCTTCTGACCTCACTTAACCTTAATCTCTTCCACAGAGGCCCATCTCCAGACACAGCCACTCGGGGCTCTGGGCTTCAGTGAATGGATTTAGGGGACACAAACAATCAGTCCACCGCAGGGCCACTCCCATTCCCCCTTCCCACCCAGACCTGTGGGCTGAGCCTTCTTTTTCTTGGGAATGGCCTCTTCGGGAGCTGTGTGTGTTGCAG
Seq C2 exon
GAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135:ENST00000358656:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTTGGCACTGTGCTT
R:
AGCCACACTGCTGAAGTTGTC
Band lengths:
182-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains