HsaINT0188195 @ hg19
Intron Retention
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144772227-144773369:+
Coord C1 exon
chr8:144772227-144772293
Coord A exon
chr8:144772294-144773242
Coord C2 exon
chr8:144773243-144773369
Length
949 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGAGCTGTGTGTGTTGCAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAG
Seq A exon
GTGAGCCCTGCTGCTGCCGAGCGCAGCCTCCCTTCTGCCCTGCTGGCTGCCTGAGACCCCAGCACACACGCGGGGAGGGTCTGTGGCAGTGGCTTCCCAGGCACTGTGCCCGTGTCTGCCTTTCTGCCTTCTCTCTTAAGGGGTGGGGAAAGAAAAAGAAAATTGGGGCCAGGCGCAATGCCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGTGGATCTCGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCACGCACCTGTAGGCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCACCACTCCAGCCTGGTGACAGAGCAAGACTCCGTCTCAAAAAAGAAAAAAAAAAAGAAAAGAAAATTGGATTCATTGACACTAGGAGAGTAGTGGCTGTTGTAGGAAAGTAGACTAGATTCTCTTAGTCCACTAGAGCTACCGTAACCAAACATGACACAGTGGGTGGTTTACACACATGCACTTCCTCTGTTCCAAAGGCTGACGTCCAAGATCAGATGCTGCAGATCTGGTTTCTGGTGGGGGCCACTATTGTGCTGTGTTCACGCGTGTGCGGGGAGGGAGCCGGGGGGCTCTCTGGAGTCTCCTGTGAGGACCAGGTCCATGGGTCAGGGCCCCTCCCTTCTGACCTCACTTAACCTTAATCTCTTCCACAGAGGCCCATCTCCAGACACAGCCACTCGGGGCTCTGGGCTTCAGTGAATGGATTTAGGGGACACAAACAATCAGTCCACCGCAGGGCCACTCCCATTCCCCCTTCCCACCCAGACCTGTGGGCTGAGCCTTCTTTTTCTTGGGAATGGCCTCTTCGGGAGCTGTGTGTGTTGCAG
Seq C2 exon
GAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135-ZNF707:NM_001100598:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTTGGCACTGTGCTT
R:
AGCCACACTGCTGAAGTTGTC
Band lengths:
182-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)