MmuEX0053573 @ mm10
Exon Skipping
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75969179-75973655:+
Coord C1 exon
chr15:75969179-75969404
Coord A exon
chr15:75973082-75973208
Coord C2 exon
chr15:75973542-75973655
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGGGCCATCTGTTTGTCAGGTG
3' ss Score
6.88
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTTAAAGGTGCAGGAGCTGGGGAATCCGACGGTGGTGCTGCTTTGGGTTGCTCTGCTCCGCGCCACTGCGCTTGCGCTGAAGCCGACCCTACCCCCGGCATCCCCCGCGGCCTTCAGATGCGCCGGCGTCTTGCTGCAGCTGCTGCTCTCGGCGAAGCTCGACGAGAGCGCTGCTTCCGACGGGGCAGCGCTCTTCCCGAGCGAGCTAACGGCGATGCTCCTCCG
Seq A exon
GTGCCAGTGACCTTCAGAGACGTGGCTGTGTACTTCTGCAGGGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
Seq C2 exon
GATGCTGTAGCCGGAGACCGGGCCTTATTACCCGTCTGGAACAATGGGATGAGCCATGGGTTGATGACTGGGACAGATCTGAGTTTCCAGATGGACAAAAAAGTTTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429_MULTIEX1-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(6.2=50.0)
A:
PF0135222=KRAB=FE(90.6=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTGGGTTGCTCTGCTC
R:
CATCAACCCATGGCTCATCCC
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types