MmuEX0053573 @ mm9
Exon Skipping
Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75799553-75804085:+
Coord C1 exon
chr15:75799553-75799834
Coord A exon
chr15:75803553-75803638
Coord C2 exon
chr15:75803972-75804085
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGTGTACTTCTGCAGGGA
3' ss Score
7.02
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATTGGCGTATTTCCGCTGGAGAGTTGAAGTCAGTGCGGCGCGCACGGGAGTTGACGTTTAAAGGTGCAGGAGCTGGGGAATCCGACGGTGGTGCTGCTTTGGGTTGCTCTGCTCCGCGCCACTGCGCTTGCGCTGAAGCCGACCCTACCCCCGGCATCCCCCGCGGCCTTCAGATGCGCCGGCGTCTTGCTGCAGCTGCTGCTCTCGGCGAAGCTCGACGAGAGCGCTGCTTCCGACGGGGCAGCGCTCTTCCCGAGCGAGCTAACGGCGATGCTCCTCCG
Seq A exon
GGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
Seq C2 exon
GATGCTGTAGCCGGAGACCGGGCCTTATTACCCGTCTGGAACAATGGGATGAGCCATGGGTTGATGACTGGGACAGATCTGAGTTTCCAGATGGACAAAAAAGTTTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429-'0-5,'0-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=FE(90.6=100)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTGCTGCAGCTGCT
R:
CCAGTCATCAACCCATGGCTC
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: