HsaALTD0007505-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:HGNC:32467]
Coordinates
chr7:64307582-64308625:+
Coord C1 exon
chr7:64307582-64307682
Coord A exon
chr7:64307683-64307868
Coord C2 exon
chr7:64308461-64308625
Length
186 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATTCATGTTTTTCTTTTAGTTT
3' ss Score
8.91
Exon sequences
Seq C1 exon
CTCGCCTGCCTGCGAGGAGCCAGCGTGGCCCGGGCAGCTGATCTCAACCTGTGATTGTGACATCACCCCTACCTGAGGAAGCCTCTTCCAGCCTGCTCAAG
Seq A exon
GTTGCCGTAGTTAGGTTTACCCTCCCTTCCTTCCCTCACCCCGTCCTTTCCCTCATCCCTGCCCCTTCCTCTGTCCCACGCGGCTTTCAGACATGCATAGTGCAGCCCCTCAGTAAAGGTGCAGCTAATGGCCCGTGGGCCTAGCAGTTGTCAGGCCTTTTGGGAGCCCATGATGGGAGCTCCCTG
Seq C2 exon
TTTTTCAGATTAACTAAGTAATTCATATTGTACATTTCTGAAATTGAAGTACGCACAGCTTCAATTCTGTGCAGGGAGGATGCAGCAGGAGAGAATATCCTGGGCACATCTTTCTGGAGAATCACTTTTACTACAAGATTTGTAAGAAACAAATTTATTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGCAGCTGATCTCAAC
R:
TCTTGTAGTAAAAGTGATTCTCCAGA
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development