HsaEX1045459 @ hg38
Exon Skipping
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:HGNC:32467]
Coordinates
chr7:64307459-64308791:+
Coord C1 exon
chr7:64307459-64307682
Coord A exon
chr7:64307981-64308225
Coord C2 exon
chr7:64308461-64308791
Length
245 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTGGACTGTCACAGATC
3' ss Score
7.35
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCTACGAGCGGTTAAGAGACTACAGCTCCCAGGATGTACGGTGATGGCACCCGTTTGGACTCCGCCCCTCTGCGCGTCTAGAGCTGTTCTCCCGTGCGGAGGGGATCCTGGCTGTTCCCAAATCTCGCCTGCCTGCGAGGAGCCAGCGTGGCCCGGGCAGCTGATCTCAACCTGTGATTGTGACATCACCCCTACCTGAGGAAGCCTCTTCCAGCCTGCTCAAG
Seq A exon
ATCCTCCTCTGTACCCCAAGAACACCCCATTGGATTTCCGGGCTGGCTGCTTGGCCTACACACCTGGGTCAGGCCTCTCGCAGGGATGCGCCTGCCACTGTAATAAAGAGGAGAAAACGTCACACGGGAAAGGCCTGACTCCTTCGTACAATCAGAATACTCAACTGCACAGAGAAGGGACCCCTTTAAGCCACTTTGGGAGCCACATCCACCACTCTGTGACTCCCACACAGGCTGGTTCCCAG
Seq C2 exon
TTTTTCAGATTAACTAAGTAATTCATATTGTACATTTCTGAAATTGAAGTACGCACAGCTTCAATTCTGTGCAGGGAGGATGCAGCAGGAGAGAATATCCTGGGCACATCTTTCTGGAGAATCACTTTTACTACAAGATTTGTAAGAAACAAATTTATTTCCAAGGTAAGAAATTAAAACTCTAAAACAAGGCTAGAAAGTCATCTGCCTTTAATAACCCTTAGTCATCTGTGCCTGATATGTGAGACTTTCTCCAAGATAAATCTCTCAAGGATAACCTATTTTCCATCATTATAATTAGTAAAAATTAGAAATTTTAGAAAGTCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCTCCCAGGATGTACGG
R:
TTCTCTCCTGCTGCATCCTCC
Band lengths:
299-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains