HsaALTD0007509-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000128000 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:33109]
Coordinates
chr19:40556231-40562196:-
Coord C1 exon
chr19:40562096-40562196
Coord A exon
NA
Coord C2 exon
chr19:40556231-40556284
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTGTTGTTGTTGTTTTCCAGGGG
3' ss Score
10.52
Exon sequences
Seq C1 exon
ACTTCTGAGGTTCTTTCTGCTCAGGACTGTATTTCCCAGAGGCCACCGCACCGGAATTAGCGGTTCCACTTCCTGTCTCCTGGGGTTGACGACCTAGCTGG
Seq A exon
NA
Seq C2 exon
GGGAGAAGCCCGAGGAAGATTGACCAATTTTGTAATTCTAGAAACATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128000-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGTTCTTTCTGCTCAGGA
R:
TGGACCATGTTTCTAGAATTACAAAA
Band lengths:
151-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)