HsaEX0074350 @ hg19
Exon Skipping
Gene
ENSG00000128000 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:33109]
Coordinates
chr19:40556231-40562112:-
Coord C1 exon
chr19:40562008-40562112
Coord A exon
chr19:40561323-40561391
Coord C2 exon
chr19:40556231-40556284
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTGCCGTATCCTTCTCCAGTCG
3' ss Score
8.24
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTGACGACCTAGCTGGGTAAGGTCTTCACGTCCTAGGAAGAAATCGGTGGCTGCGGGAGGTCTTCGTGGACTGGGACTCGAACCTGACCGACCCGGCAGTGCGG
Seq A exon
TCGTATTATTATCCAAAAGAAGGACCGAGAGGAGGATGAGAGCGTTATTGTTGCACACTTAAGTCAAGG
Seq C2 exon
GGGAGAAGCCCGAGGAAGATTGACCAATTTTGTAATTCTAGAAACATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128000-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACGACCTAGCTGGGTAA
R:
ATGGACCATGTTTCTAGAATTACAAA
Band lengths:
159-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)