HsaEX0074350 @ hg38
Exon Skipping
Gene
ENSG00000128000 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr19:40048670-40056205:-
Coord C1 exon
chr19:40056101-40056205
Coord A exon
chr19:40055416-40055576
Coord C2 exon
chr19:40048670-40048796
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCATTTCGTACGAAGTGA
3' ss Score
4.24
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTGACGACCTAGCTGGGTAAGGTCTTCACGTCCTAGGAAGAAATCGGTGGCTGCGGGAGGTCTTCGTGGACTGGGACTCGAACCTGACCGACCCGGCAGTGCGG
Seq A exon
TGAGGGAAGTTGTGGCCATGGAGGGTGCTTTCAAACTTAGTCTGCGCTCCAAGAAAAGCCTGGAGTCTCACGCTTGCCGTATCCTTCTCCAGTCGTATTATTATCCAAAAGAAGGACCGAGAGGAGGATGAGAGCGTTATTGTTGCACACTTAAGTCAAGG
Seq C2 exon
GGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGCAGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATATCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128000_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCTAGCTGGGTAAGGTC
R:
CCAGTGATATCAGGTGGCTGT
Band lengths:
228-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development