HsaALTD0007510-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000128000 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr19:40028260-40047470:-
Coord C1 exon
chr19:40047406-40047470
Coord A exon
NA
Coord C2 exon
chr19:40028260-40036626
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
GCCTTCTTCATTTCTTTCAGATT
3' ss Score
11.62
Exon sequences
Seq C1 exon
GAAGTTCCATTTCTAAGCCAGATGTGATTACATTACTAGAGCAAGAGAAAGAGCCCTGGATTGTT
Seq A exon
NA
Seq C2 exon
ATTTGGAGTCAAAATATGGACCTGAGAAAATATCTCCAGAAAATGATATTTTTGAAATAAATTTACCCAAACATGTTATAAAGCAAATAAGTAAAACACTTGGCCTCGAGGCCTTTTATTTTAGAAATGACTCAGAATATAGAAGTAGATTTGAGGGACGACAGGGACATCAAGAAGGATATATCAACCAGAAGATCATCAGCTATGAAGAAATGCCTGCTTATACTCATGCTTCTCCTATTCATAATACACATAAACCATATGAATGTAAGGAATGTGGGAAATACTTTAGTTGTGGTTCAAATCTTATTCAGCATCAGAGTATTCATACTGGAGAGAAACCCTATAAATGCAAAGAATGTGGGAAAGCCTTTCAACTTCACATACAACTTACTCGACATCAGAAATTTCATACTGGTGAGAAAACTTTTGAATGTAAGGAATGTGGAAAAGCCTTTAATCTTCCCACCCAGCTTAATCGCCATAAGAACATTCACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128000-10-15,12-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF0009621=zf-C2H2=WD(100=3.0),PF0009621=zf-C2H2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF0009621=zf-C2H2=WD(100=3.0),PF054957=zf-CHY=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=2.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGAAAGAGCCCTGGAT
R:
CCTCGAGGCCAAGTGTTTTACT
Band lengths:
136-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains