HsaALTD0007513-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148990842-148991503:+
Coord C1 exon
chr7:148990842-148990933
Coord A exon
NA
Coord C2 exon
chr7:148991471-148991503
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGA
5' ss Score
5.35
3' ss Seq
TCTGTGTCCTTTGCCTGCAGAGA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GCAGCATGGTGCTGGGCGCTGCAGGGGCTCATTAATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGAACACAGACACAGTACACG
Seq A exon
NA
Seq C2 exon
AGACCTGTCTGGGCCGCAGAGAGGAGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-21-18,22-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGGCTCATTAATGCA
R:
CTCCAGACTCCTCTCTGCGG
Band lengths:
107-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)