HsaEX0074361 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148990468-148991503:+
Coord C1 exon
chr7:148990468-148990583
Coord A exon
chr7:148990842-148990933
Coord C2 exon
chr7:148991471-148991503
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCATGAACTTGTCTGTAGGCA
3' ss Score
6.67
5' ss Seq
ACGGTGGGA
5' ss Score
5.35
Exon sequences
Seq C1 exon
ACGCAGGCCAGCTGGAACGTCCCCAGGCGTTCTGTCCTGGATCAAGCAAGAGGAAGGGGCAAGTGGGAGGAGCCAGCAGGGCCCACAGGAGACCACTGTGGCACACCTGTGCTCAG
Seq A exon
GCAGCATGGTGCTGGGCGCTGCAGGGGCTCATTAATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGAACACAGACACAGTACACG
Seq C2 exon
AGACCTGTCTGGGCCGCAGAGAGGAGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'20-18,'20-17,21-18
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=0.426 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCAGCTGGAACGTC
R:
CTCCAGACTCCTCTCTGCGG
Band lengths:
146-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)