HsaINT0093514 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:148990468-148991107:+
Coord C1 exon
chr7:148990468-148990583
Coord A exon
chr7:148990584-148990841
Coord C2 exon
chr7:148990842-148991107
Length
258 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTCATGAACTTGTCTGTAGGCA
3' ss Score
6.67
Exon sequences
Seq C1 exon
ACGCAGGCCAGCTGGAACGTCCCCAGGCGTTCTGTCCTGGATCAAGCAAGAGGAAGGGGCAAGTGGGAGGAGCCAGCAGGGCCCACAGGAGACCACTGTGGCACACCTGTGCTCAG
Seq A exon
GTAAGGCATGCTGGGCCATGTCTCCTCAGGCCTGTATCCCTGGGCCTTAGGAGACATGGCGTCCCCTGGGGGGCCTCACAGCGCCTCTAGTGGGGCCTTCTCCTGGGCGAGGCTCCTGAGGGAAGGCAGTGCGCAGCCTTGGCTGTGTCTCTGCAGAATCTTGTATGCTTGCTGCGTGGTGTCCTCCCATGCAGTTGCACGAAATCATTCTTTTATTCCTGATCCTGTTTCCTGTTTATTTCATGAACTTGTCTGTAG
Seq C2 exon
GCAGCATGGTGCTGGGCGCTGCAGGGGCTCATTAATGCATGAGACACAGATTCCACTCAGGAGAGAGAAGACGAACACAGACACAGTACACGGTGGGAAGGGGCACTTCCATGTCTGCAGCCAGAGAGCCCTTTCAGAATCTGACCCAAAAGATGGCCAGTATTCTAAGAAAAAGCACATATGCTTACGATGTGCAAACAGCTGAAGGTGTTCTTTCAACTATAGTAAAAGGGGTGTCTCGGTGGCCACAGGCGGCCCAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC155060:NR_036573:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTTCTGTCCTGGATCAAG
R:
ACACCTTCAGCTGTTTGCACA
Band lengths:
302-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)