RnoINT0168769 @ rn6
Intron Retention
Gene
ENSRNOG00000026874 | Zfp956
Description
zinc finger protein 956 [Source:RGD Symbol;Acc:1304879]
Coordinates
chr4:77632474-77634014:+
Coord C1 exon
chr4:77632474-77632581
Coord A exon
chr4:77632582-77633327
Coord C2 exon
chr4:77633328-77634014
Length
746 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGTGTCTCATCCCACCAGAAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTGTGTGAGAAGAGCCTGCAAGAGACAACCAGTGCATCCCTATGCTCAG
Seq A exon
GTGAGGCCCAGGGTAGGCTGCATTTCTGGGCCTCTGAACCATATGGGGCCTTCTGTATGAGTGTCTGGAAGTGGCATCGAACAGATATCCCGAGGTGTCCTGTGGTCTCTGGGCCATATTTGCTGTGGACGTCCTTCCACAGAGTTGCATGAAACTGTCATTTTGCCCCCGGTCTCCTGGCTTTGCTTTATGAACTACAGCTGGCATGTTACTAGGTGTGCCCTGCAAGGACTAACTGCCTGGGGCACAATTCCCCATTCCCAGAAGGACTTTTCAGTTAGAAGAAAGATTACCAGAAATTAACAGTGCAACATAAGAATAAGAAACCATGTCTGTGCCAGAGAGCCCTTTCAGAATGGTAAAAATTTCGGACAGTATCCGCAGAAGACACATACAGTCAGTGTGTTTACACCTCTGTAATCAGGGTGTTATAGGCAGCCCATGTCACTCATGGTCTTGATGGCACAGATGAGTGGTTGTCAGACAGCAGCATCTGAAGGTATAGATGAGAAGAAGCCTTAAGCAGAGGCCCCTGGCTTAGCTTAAAGGGCATCTGGGTGTCATGTAGATGACTCAGAGTGGGCCTCTGGCAGAAGACAAATGGGAGAAAGGTTAGTTCCAGAGTGAGAGCCTTCAGTAACAGGCTCTTGTGAGCCTCAGGCCTTTGATACCAAAGAACAGAGTCCTGTGTCTTAGATCCAGAGCTTGTGACAGAGATGACTCATGTTTGTGTCTCATCCCACCAG
Seq C2 exon
AAACATGGCTGGCTAACAAGAAAAGGACCCTGGAGGGGATGTCCCTGGCACCAGAGCCATCCTGGGTGACTGAAGGGGGACCTGGCAAGGAGGATTTCAGCGAGCAGGGTACCTGTGGTGATCTGCTCCCTGTTTGCAGAGAGAGAGAGGCCTCCTCCCTCCCTCGAGGCTCTCAGAGTCAGTCAGTGTCCGCTGCTGAGGGCACTGAGAATGGCCAGAACTTTAATGTGCAGGAGCTCAGCAAGCAGCTCGAGTACTCACACCATGGATCGCAGCCCTTTGCCAGTCTCCAGTGTCCCCAAAGTGCTGCACAGCAGGTCACTCTCACTAGGAATCGTCGTGCACCCGCAGCCCAGCGTGCCTACACCTGTGTCCAGTGTGGCAAGAGCTTCGTCCACCAGTCGACACTTACCACACACTACCGCACACACACTGGGGAAAAGCCTTACAAATGTGCTGAGTGTGAGAAGCGGTTTGGCCGCCTGTCTACACTGCTGGAGCATCAGCGTACCCACACTGGAGAGCGGCCCTTCCCCTGCGCACAGTGTGGCCGTCGTTTTGGGCGCCTGTCCACTCTGGTGGAACATAGGCGCACACACACGGGTGAGAAGCCATTTCCATGTACCCAGTGTGACAAACGTTTCACACGCCTGGCCAACTTGACCGTGCACCAGAGTGTGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026874:ENSRNOT00000059263:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=11.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGAGAAGAGCCTGCAA
R:
GACACTGGAGACTGGCAAAGG
Band lengths:
346-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]