MmuINT0007041 @ mm10
Intron Retention
Gene
ENSMUSG00000045466 | Zfp956
Description
zinc finger protein 956 [Source:MGI Symbol;Acc:MGI:2141515]
Coordinates
chr6:47962525-47965300:+
Coord C1 exon
chr6:47962525-47962632
Coord A exon
chr6:47962633-47963321
Coord C2 exon
chr6:47963322-47965300
Length
689 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTGTGTCTCATCCCACCAGAAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
AAACAGGCCAGCTGGAATCTGCCCCGAGTGTTCTTCCCTGGATCAAGCAAGAGGAAGAGGTATGTGAGAAGAGCCTGCAGGAGACAGCCAGTGCATCCCTGTGCTCAG
Seq A exon
GTGAGGCCCAGGGCGGGCTGCATTTCTGGGTCTCTGAACAATATGAAGCCTTCTGTATGAGTGTCTGGAAGTGGCATCGAGCAGGTTTCCTGTGGTGTCCTGTGGTCCCTGTGTGTGTTTGCTGTGGTCATCTTCCCACAGAGTTGCATGAAATTGTCATTTTGTCCCCAGTCTCCTGTCTTTGCTTTATGACCTATAGTTTGCATGGTACTAGGGCACTGTAAGGACTGACTGCATGGGACACAATCCCCCATCCCCAGGAGGGCTTTTCAGTTAGGAGAAAGATTACCAGAAATTAGCACTACAACATAAGAACAAGAAGCTATGTCTGAGCCAGAGAGCCCTTTGAGAATGGTAAAAATTGTGGACAGCATACACAGAAGACACATATACTCTGTGTTTACACTTCTGTAATCAGGTTGTTAGAGGCAGCCTATCTATCTCATTCATAGTCTTGATGGCACAGATCAGTGCTTGTCAGAGAGCAGCATCTGATAGTATAAATGAGAAGAAGCCTTAAGCGAGGCACATGGCTTAGCTTAAAGGACATCTGGGTGTCATGTAGATGACTCAGAGTGGGCCTCTGGCAGAAGACAGATGGGAGATAGGTTAGTGCAGAGCGAGCGTCAGTAACAGGCTCGAGTGAGCCTGTGGCCGAGATGACTCATGTTTGTGTCTCATCCCACCAG
Seq C2 exon
AAACATGGCTGGCTAACAAGAAAAGGACCCTGGAGGGGATGTCCATGGCACCAGAGCCATCCTGGGCAACTGAAGGAGGACCTGGCAAGGAAGATTTCGAGCAGGGAAGCTGTGTCGATCTGCTCCCTGTTTGCAGAGAGAGAGAGGCAGCTCCCCTCCCTCGAGGCTCTCAGAGTCAGCCTGTGCCAGCTGCTGAGGCCACTGAGGATGACCAGAACTTCAGTGTCAGAGAGCTCAGCACACAGCCTGAGTACTCCCACCATGGATCTCAGCCCTTTGCCAGTCTCCAGTGTCCCCAAAGTGCTACACAGCAGGTCACTCTCACCAGGAATCGCCGTGCACCCACAGCCCAGCGTGCCTACACCTGTGTCCAATGTGGCAAGAGCTTTGTCCACCAGTCAACACTTACCACACACTACCGCACACACACCGGGGAAAAGCCTTACAAATGTGCCGAGTGTGAGAAGCGGTTTGGCCGTCTGTCCACGTTGCTGGAGCATCAGCGTACCCACACTGGAGAGCGACCCTTCCCATGTGCACAGTGTGGTCGTCGTTTTGGGCGCCTGTCTACTCTAGTGGAACATAGGCGCACACACACGGGTGAGAAGCCATTTCCATGTACCCAGTGTGACAAACGTTTCACACGCCTGGCCAACCTGACAGTGCACCAGAGTGTGCACTCTGGCGAGCACGCCTTCCAGTGCACCCAGTGTGGCTCATGCTTCACGCACAAGCCCAGTTTCCTGCGACATCTGCGCAGCCACTCTCAGGAGAAGCGCTTTAGCTGTGGCCAGTGTGGCAAGAGCTTCACCTGTCGCTCCTGGCTGGTACGCCATCAGAGCAGTCATGCACACTTGGCATCCTCTGCTTATGTGGCCTGTGAGAGGAGCTCACCAAGTCATGTGTCACCTACAGGTCTGTTTAAAGGCGCAGCCAGGGGAAAGTTCTCCAGTGACCCTCCTGTCTCACCCATATCCAAGGACACTGTGGTCAGTCAGGACCACAAGGCATATGGTGGAGGTCAGCAGCTCAGCGACCATGGTCAGGAAAGTCTAGTGGGGTCTCTGCATAGTTGTCTGTCTGTAAAGATGGAGAATGCAGGGTAGCACCCAGGGAGCTCCATAACGAGGCCACTAGGACACGGGCCTCCTGGGTCCCCTCAAATCCAAGCCATCTGCTAGGCTTCCCAGGGCTAGGTTCTCCCATGGACTGCTGGTGCTAAGTGCCCCTGGGATTCCTGCTGCAGGGAAGTTTCATGAACACAGAAAAGGTGGCAGAAACAAGCAGTTCAACAGTCCCCTGAGATCTTGGTGGCTCCCATCACTGTCTTAGCAATGTAGGCAGCAACAAAAGGCCGGCTAGGAAGGTTGCAATTTTGAAGTTGTTCAGCTTCTGGTTGAGCAGCTCAAAACTCAAACTAGTTTCCAAGATTTCTCTAGGGCAGAGCTGGGGATGTGACTCAATAGAGTGTTTATCGAGCATGTGTGGATGGAGCCATGGTTAGATCCCCAGCATTAGATTAAACCGGCCTTGGTGGTACGTGTCTGTAATCCTTGTATTTGTGTAGAGGCAGGAGGTGCAGAAGTGTAAGGACATGCTTGGCTATATGAGCCCCTGTTTCAAGGAACCAAAACTTAGGAGTTCAAAGTCGGAGTTGTCAGATTGTCTCTCTCACCAGTGGCCACATGCTTATATAACAGCTTGTGTGTTTCCAGGGAGCCCCACTGGAGGGGATGGGACTGTTAGTGTCATTGTCACCACTTTGGAGGAATGTGGGAAAACAGGCCTGTGCTGTTTGCATCTGGGGCTGGGGTTACTGAAGGTCTGATTTCCCTTACTTTGTTGTTGTTCTTTTAAGACAGGGCTGCCCTGGAACTTGCTCTGTAGGCTGACCTTGAATTCACTGAAATCCACCCGCCTCTGCCCCATACTCACTTTAAAAACCTGTGAAAATAAAGGTATTTGTGAAGACGTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045466:ENSMUST00000101445:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGGCCAGCTGGAATCTG
R:
GTGTGCTGAGCTCTCTGACAC
Band lengths:
351-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types