HsaALTD0007514-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148991631-148994392:+
Coord C1 exon
chr7:148991631-148991992
Coord A exon
chr7:148991993-148992274
Coord C2 exon
chr7:148994142-148994392
Length
282 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
GTAATGATATTCCACTCTAGGTT
3' ss Score
7.57
Exon sequences
Seq C1 exon
GCCCCCCGAGCCAGGCTGAGCCAGCCGCTAGGGGCACGGAGCAGTGCCCACCTTGCGCCCAGTGTGGCCAGAGCTTCGGCCAGAAGGAGCTCAGTGCGCCGCACCAGCGCGTGCATCGTGGCCCCCGGCCTTTCGCTGGTGCTCAGTGTCCCAAGAGCTTCACGCAGCGGACCACCCCCGCCAGCCACCGTCGGGCGCACGTGGCCGAGTGCACCTACACCCGCGCCCAATGCGGCAAGACCTTCCTCCAGCAGTCGACGCTCACACCCACTACTGCGCGCACATCAGGGAGAAGCCCTACGAGTGCGCCAAGCTCTTTGGCCGCCTGTCCACGCTGCTGGAGCACCGGCACATGCACACGG
Seq A exon
GTGAGCGGCCCTTCCAGTGCACGCAATGTGGCTGCTGCTTCAGCCGCCTGTCCACGCTGCTGGAGCACCGGCACACACACATCAGCGAGAAGCCCTTCCAGTGTGCGCAGTGCGACAAGCGTTTCACGCGTCTGGCCAACCTGACCGTGCACCAGAGAGTGCACTTGGGCGAGCGCTCCTTCCAGTGCGCCCAGTACAGCAGGAGATTCATGCAGAAGCCCGGCTTCCTGCGTCATCTGTGTGGCCACTCGCAGGAGAAGCACTATCCTTGCAGCCCTTGTG
Seq C2 exon
GTTCCCATGATCAGTGGTGAAATATAGTGATTTTCACCTGTGCTTCCATTCTGAAGTTCTGGAAAGAAGTACTGGATGGACTGAAGTCCAGGACAACGTCCCAAAGAAAGGCAGAGTCCAGGTAGGCTTGGAGGACCAAGCCCTGGATGAGCACTGGAGGGCAGAGGCCTCAGTGTCCAGCACTGTGCCCTGCACATGGAAAGCCCCTACGTTTGTGGAATGAATGAATAATAAAAATGTTTTCATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-25-20,26-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCTTCCTCCAGCAGTC
R:
CTCTGCCCTCCAGTGCTCATC
Band lengths:
293-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)