HsaINT0093508 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:148991631-148994403:+
Coord C1 exon
chr7:148991631-148992274
Coord A exon
chr7:148992275-148994141
Coord C2 exon
chr7:148994142-148994403
Length
1867 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
GTAATGATATTCCACTCTAGGTT
3' ss Score
7.57
Exon sequences
Seq C1 exon
GCCCCCCGAGCCAGGCTGAGCCAGCCGCTAGGGGCACGGAGCAGTGCCCACCTTGCGCCCAGTGTGGCCAGAGCTTCGGCCAGAAGGAGCTCAGTGCGCCGCACCAGCGCGTGCATCGTGGCCCCCGGCCTTTCGCTGGTGCTCAGTGTCCCAAGAGCTTCACGCAGCGGACCACCCCCGCCAGCCACCGTCGGGCGCACGTGGCCGAGTGCACCTACACCCGCGCCCAATGCGGCAAGACCTTCCTCCAGCAGTCGACGCTCACACCCACTACTGCGCGCACATCAGGGAGAAGCCCTACGAGTGCGCCAAGCTCTTTGGCCGCCTGTCCACGCTGCTGGAGCACCGGCACATGCACACGGGTGAGCGGCCCTTCCAGTGCACGCAATGTGGCTGCTGCTTCAGCCGCCTGTCCACGCTGCTGGAGCACCGGCACACACACATCAGCGAGAAGCCCTTCCAGTGTGCGCAGTGCGACAAGCGTTTCACGCGTCTGGCCAACCTGACCGTGCACCAGAGAGTGCACTTGGGCGAGCGCTCCTTCCAGTGCGCCCAGTACAGCAGGAGATTCATGCAGAAGCCCGGCTTCCTGCGTCATCTGTGTGGCCACTCGCAGGAGAAGCACTATCCTTGCAGCCCTTGTG
Seq A exon
GTGAGAGCTTCACCTGTCCCTCCTGGCTTGTGCGTCACCAGGACAGCCATGCTAGCCAGGCCTCTCCATCTTGCCTGGTTTGTGAGAGGGACTCCTCGACCGATGAGCCGCCCACGGGCCTCAGGGGTGCAGTGTGGGGGAGCACCCCTAGTAATCCTTCTGCCGCACTCAGATTTGAGGGCACTGGTACAGAGCTGGGCCTCAGGAGGTGCCCTGGGGACAGGCAGCGGGGCAGTGGTGATCAGGAAGGTCTTGGGTGGGGGTCCCTTGCCCAGTTCTCTTTCTCGCGTGAAGATGGAGAATGTGGGTAGCACCCAGAGAGCTCCCTAAAGGGGCTCTGAGGGCCCAGGGGCAGTTGGTGCCCCTTAAATCTGAGCAACCTCTCCTGGGGGCCACTTCTTGGCCAGGTCAAAGTATTCTGGCCATGGTCTTGGCTTCCCGGGGGAGGGCTGTTCTCCCAGGCACTGAGATTGCCCATGGGCCTTCTCGTTGCAGGGAGGCGGCTGGGATAGAGGCCAGTCCCAAACACCTGAGCCTCACTGAGGGGAAGGCCTGGGCTTGGAGATGGGGTGCGCAGGAGTGGCTGGCTTTGCCTTGTTCTATTAGGCGAGTGATTTTCAGAGACAAAGGTCCAAGTTAGGAGACGTAATTACTCAGTGCTTTGAAGGGACATCCAAGGTGCTCACTCTTAGCCATAGCCGTTGGTTTCCTGGATGCTGACTGTGAAGATTCTAAAGTGCTTCCTAGGGTGGGCGGTGGTGGCAGGAGGCCTTGGACGGAGTCCAGGCCAGACCCAGCCTCCTGTTTAATAGGCTGAGCCCAAGCGTCCCTCAGATGCGAATCCAACAGCCTTGGTGAGTTGTAAGATTTCATGGAAACTTTCCCTGACTTCTGTCTCCCCCTTGCTCCCCATTACCTGGGAAAGGCAGCTTTGTGGGCCATGTGTCCCGGAAGGGCCTGGGCTGGCTGTGGCCCAGTGCTCAGGACCAGCCATCTTGGCCCTCACAGCGCCCTGCCCAGTTGGTGTAATATTTGTCTTCAAGCCATTGTTGGAGCAGGCAGGCAAAGGGGGCTTTCTGAGGATCCAACGTGTGCCAGCCACTGGGATACAAAGACAGGCCTGGTTCCTAGCTGTGGGGCTGGGAAGGGTATCTGACATCAATGGTGGCACCTGGCAGAGGACACACAGACAACAGCAGGCAGCATGGGCTGCAGTAAATGTTGCAGAAGCACCTAAAGGTTGAGCAGAAGGGAGGTAGGAAACCTGGACATGGCCTGCCAGCAGCTGAGAAGCCCCCCTGAGATCCTGGCGGCCCCGCCACCATCTGAAGATTTAGGCCAGTCCCTTGGGCTTTTCAGGCAGGCCCTTATGGTGGCCGGCCAGTTTGGGACCCTCCCATTTTGATACATTAGTTCCCCCTCAGCTACTGGAGATCTCAGCCACAACTGGGCTCCAGCTGTGACCCAGACTCCGCCAGGATCCCCTAGATCCTCAGCTGTCAGATAATCCCCTGTCCCCCTCCTCCTCCCCACTCAACCCCCAGTGCTTGACATGAATGCATGTGTGCTTCCTAGGACTAGAGGCCGGTGCTGTCTCTACCATTGCCCTCACTTTAAGGGGCACACGAGCAGATGGTAGCAAGCCCTGGAGAGCAGCACTCGGGCAAGTGAGGTGGCTCTGGCACTGCCCCTGGACTTTCATGTTTGTAGCTTGAGCTGGTTTTAATTGGAAGCTCTGTGATTTACATAATCACTTACAATCTCTGTAAATAAGGAACTATTTATGAGGAATTGTAAATTTCCTCTCTCCCCCTTCTTACCCTGTCTGTGATCTTGTCTGTGATGCAGTAATGATATTCCACTCTAG
Seq C2 exon
GTTCCCATGATCAGTGGTGAAATATAGTGATTTTCACCTGTGCTTCCATTCTGAAGTTCTGGAAAGAAGTACTGGATGGACTGAAGTCCAGGACAACGTCCCAAAGAAAGGCAGAGTCCAGGTAGGCTTGGAGGACCAAGCCCTGGATGAGCACTGGAGGGCAGAGGCCTCAGTGTCCAGCACTGTGCCCTGCACATGGAAAGCCCCTACGTTTGTGGAATGAATGAATAATAAAAATGTTTTCATAAGTGATGCCATTCTC
VastDB Features
Vast-tools module Information
Secondary ID
-LOC155060:NR_036573:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACACACATCAGCGAGAA
R:
TCCAAGCCTACCTGGACTCTG
Band lengths:
344-2211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)