GgaINT0090376 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:471971-473880:+
Coord C1 exon
chr2:471971-472058
Coord A exon
chr2:472059-473794
Coord C2 exon
chr2:473795-473880
Length
1736 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
TAAAATTCCTTCTTTTACAGTCA
3' ss Score
8.11
Exon sequences
Seq C1 exon
CCCCCGCCGCCGTGGTCAAGTCTCTCTTTCCCGCCGAGCTCTCGCCGGTCTCAGATCTTCGCCTCACCATGGAGCAGCTGGGACACGG
Seq A exon
GTCAGTCAGAGCCCCCCGCGCCTCTCCTCCCACCGAGGCCCTCCTTTATCCCCCTCGCCCCTTAACCGGGGCCTCGAGGGCCTCCCCTTTTCCCCTGGGCCCCAAAACAAAGCCTGGAGGGTTCAAACAGCGAGGCCGGGAGGGCCTTCCCAGCGCAGCCCCCGGCCTGTGAGGCTCCTCATACCTCCAGCTGAGGCCCGGAGGAGCTCCTCCCCAACCCACGGACGGAAAGGAGCTCTTCTTCCCTGCCCCCCCTTCAAGTAACGCTTTAAGAACCCCGTATACCCGCCCCCTCAACTCCTTCCCCAACGACGCCTTGAAGGCCCATTTCTCCCCCTTCCCCCCAAACTGAGCCCTCCGGGACTTCTTCAGTCCCTAAAATCGCGGCCCGGTGCTCTTCCCCCTCCCCTCCGTATCCCCTTAAGGAGCCCTCGATGAGCCCTTCCTCACCCCCCTTTCCCCCATCCAAACTGAGACCTCCAGGATCTCAGCGACCCCCAAAGCAAGGCCTGGAGATCACCCCCAAACAGGACACGGGGCGGTTCATCCCGTGCTGCCCCCCTACCCCCAAAGCGAGGCACCACCGGTGCTCTCCTTCCCCCCGCTGCTCACAGCACCCCTCACCCTTCCCCCCTTCCCTCCCGCCATGCTCTCCTGCCCCCACATGGTGCAGGCCCACGTTCCCGCATCCCTATGTGCCACCATCTTCCCTCACTCTCCTCGGGACATCTCATCTCTTCCCACCGTGTGAGTGCTTTTCCCGCTCTGCAGTTTGGCTCTCCTATGGCTCCCTTCACACTCCGCCCTCCTGCCCAGTCCTGAGTGCCCTGCTGGTATTTCTCCTTTGCTGCTTGCTTTTAGATCGTTCTTATTTCTGTAACCAGCTCTGGGATCCTTCCTGCCTTCAGATTCCAGGGATTCCTGCTAACGACTCCCACCGGGCCCTTCCATGTTGGGTAATCTGCCCTGTGGCTTTGCACCCCCACCTTGTGCCCTGCTACATCTTTTGAGTTAATCAATATGATAAGAGCAGCCCCACTCGGTAGCTTTTCCCTCCTTTAAAGGTGGTGTAGAGGAATGCTCTGCATGATGTGTGTATTTCCTGCACTGGAGCTGCCCACGTGTGTGAGGAGCATGTGCCCACAGTGCTCCTGCACCCAGGAAGTTGGGGGGGCTGCACCCACTGGAGATTGGGTGGGCAGGGAAAGGCTTGGACTCGAGCCTTAGCCTTAACAACTTCTCTGCTTTGAAAAGAAAAAACAAATCCCCAAAGCTAAAGCAGCCCAAACCTCCCAGTTCTCAAACTCACAGCTCATTTTTATATGCAAAACAATCATGAAATCAGTGCTGAAGAGGAGGTTACAGTCCTGAGAGAGATAATGGGCTGCTGATAGGGGTGTTCCCAGAGAACAGCTTGGGAGGTGCTGCTGTGCCTCCAGGCACCAATATCACGCTCCACAGAGTGGTTTTAGTCCTGAGCTTTTATTGCAGGGTGTCGTTTTGTTGTATTAAATCTTTTGTTTGTGAAGGCACAAGAGCATGAGAGGCTCTGAAACAGTCACAGAGGAGGAAAAAAAAGCCACAAAACCTCCTGGTTTGTGTGTTGTGCAGAAGGCTTGGTGGTGTGGTGCAAGGTCCCTCAATCCTGTGCTGTATGTCTGTGTTCTTCTGCTCCTGTTTTGTATTTCTCACTTAAAAAAAAAAAAAAAAGCCATTTAAAATTCCTTCTTTTACAG
Seq C2 exon
TCAGCATGAAAATACTGAACAAGATCTGGGAAACAAGAGTGCAAATGGTTTGCAAAGAACAGTGTCCTCAGAATCAACAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]