MmuINT0032725 @ mm9
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109778083-109779738:+
Coord C1 exon
chr9:109778083-109778663
Coord A exon
chr9:109778664-109779664
Coord C2 exon
chr9:109779665-109779738
Length
1001 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGTGCCTCTCTTGGTTTCAGTGA
3' ss Score
7.08
Exon sequences
Seq C1 exon
CACTTTGGTGGTGAGGGAAGTGAAGGTTCCTTCTCTGCGAGCCGGCTACGGAGCAAGGAGGGAGAAAAAAAGTGAGGCGAGTTAGTCGGAGCGGTGGTCTCAAGACTCTTCCTCCACGGAGTTTGTTTGGATTTAATCTTGAGGTTGCAGGCGCCCGCCCGCCTGCGGGCCTCGCGGGACAGAGAGGGAAGCACCGGTGCTTGTGCCTGGCGCCTGCCGAGTCCCCTACGCTCGCCGGTCCGCGCCGCTGCCCGTGGCGGCCGCGTCTCTGAACCGCGGGGTCGTGTTTGTGTTTGACCCGCGGGCGCTGGTGGCGTGGCACGCGGCTGAAGCCGGTGCCAGCGGGGCGGGGCCCGGCGCAGCGGAGGCGGAGGAAGACGGAGCGGGAGTCCGGGCAGGCCCGGCGGCGCCATGGAACTGGGCCCGGAGCCCCCCCACCGCCGCCGCCTGTTCTTCGCTTGCAGCCCCACGCCTGCGCCGCAGCCCACGGGGAAGATGCTGTTTGGCGCGTCAGCTGCTGGCGGACTGTCCCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGGAAGGACTGGGCAG
Seq A exon
GTGAGAGACCAGCGAGCGATGCCCCAGGCCGCTGGCCTCTGGTCGGCCCTCGGGATGATCCAGCAGGAAACAGAGTCTGTCCACTTGGTTCTGATGCTCCGACCCGGAATGGCCTGGCTAGGGCCCGCCATGTGCACCCTCCCTCCCGGGCGGAATGTTGGGCGGGAGAGGCCGTTCGGATAGTCCAGGGCTATCCTCAGCCAAGAGCCAGACCGCGGAGATCGAGGAAGCCTGCTGGGCATCCTGTCTTGTTCACCCCTTTCAGATTTCTCTCTACGCTGTCTCTATTCCAGAAAAGTCTTTGGAATCTACCCTTATGGGGGTTGGGAGGGAGGGTGAGAATGGGTCCTCCTAGGCCCTCTTTGCTGAACCACCCGCGCCGGATCTTAGTTTCCTGTAAGCTTTGTTCCTTCTCAACAAAGGGACGTGGCATTTTCTTTTCTTGCATTTGTGTAAAATCTATGCAGCCACCTGGCCGGCACGTTTCTTGTATCTACCCATCTACTACCTTTTTTAAGCTATCACTTTTTACCTAACTTTTCCATATTGGAAATCTTCGAGGACTTTGTAGTCCTACACCACTATCACTAACAAAAATGCTTAACACTATTTTTAGTGAAGTTGCTTTTCCTTCGATGTTGGGTATTTCGCCTCCTAAACTTGTCTTACAACTTTTGCAAACCCTGAAAAGCTGGGACTCCTGGCCTAGTCACCTTTGCCCTTACTCCTGGCTCACTCAGAACCTCAGACTGAGGCTCTCCTTTAAGGAAACCCAGCCCTTGCCACAGGCCTGTCTGACAATGTGGCCCAAGGCCAAACCACTCACTCCTTTCTTTGTTTAAATGCCAACTGGGGTATTCTGGGTGGCCAAGTGGGGTGTCCTTGGCTTGGTCTCTCAAAGATGGTTTGTGGCAGCCTGGCTACTTCGTGGCCTGTATGTCACCTTTTTTTTAATCATGTGCTAGAAATTGCTCATGTGGAGGTGCCTCTCTTGGTTTCAG
Seq C2 exon
TGACTGTGAGAAAATGGAAGTGAGAAATAACAGCAGTCTACAGAGAATGGGCTCCTCAGAATCGACCGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-Cdc25a:NM_007658:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGTTTGTGTTTGACCCG
R:
AGCCCATTCTCTGTAGACTGCT
Band lengths:
354-1355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: