RnoINT0032502 @ rn6
Intron Retention
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117953444-117954912:+
Coord C1 exon
chr8:117953444-117953856
Coord A exon
chr8:117953857-117954835
Coord C2 exon
chr8:117954836-117954912
Length
979 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGTATTTCTCTTGGTTTCAGTGA
3' ss Score
6.16
Exon sequences
Seq C1 exon
CTCGCGGGACACAGAGAGAGAAGCACCGGTGCTTGTGCCTGGCGCCTGCCGAGTCCCCGACGCTCGCCCGTCCGCGCCGCTGCCCGTGGCGGCCGCGTCTCTGAACCGCGGGGTCGTGTTTGTGTTTGACCCGCGGGCGCTGGCGGCGTGGCACGCGGCTGAAGCCGGTGCCAGCGGGGCGGGGCCCGGCGCAGCGGAGGCGGAGGAAGACGGAGCGGGAGTCCGGGCAGGCCCGGCGGCGCCATGGAACTGGGCCCGGAGCCCCCCCACCGCCGCCGCCTGCTCTTCACTTGCAGCCCCACTCCTGCGCCGCAGCCCACGGGGAAGGTGCTGTTTGGCGCGTCAGCTGCTGGCGGACTGTCCCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGGAAGGGCTGGGCAG
Seq A exon
GTGAGAGACTGGCGAGCGATGCCCCAGGCCGCTGGCCTCTGGTCGGCCCTCGGGATGACCTAGCAGGAAGCAGAGTCTGTCCCCCTGGTTCTGGTGCCCGGATCCGGGATGGCCTGGCCAGGGCCCGCCATGTGCACCCTCCCCCCGGGCGGAATGTTGGGCGGGAGAGGCCGTTCGGATAGTCCAGGGCTATCCTCAGCCCGAGCCAGACCGGAGGTCAGGGAAGCCTGCTGGGCATCCTGTCTTGTTCACCCCTTTCAGATTTCAATCTACTCTGTCTCTATTCCAGAAAAGTCTTTGGAATCTACCCTTACGGGGGGAAAATGGCCTTCACTACCACTCTTTGCTGAACCACCCGCGTCGGATCTTAGTTTCCTGTAAGCTTTGTTCCTTCTCAACAAAGGGACATGGCATTTTCTTTTCTTGCATTTGTGCAAAATCTATGCAGCCGCTTGGCCCGCACGTTTCTTATATCTACCCATCTACCTTTTTACAGCTATCACTTTTTAAACTAACTTTTCTACATTGGAAATCTTGGTGGACTTAGTAGCTCTACACCACTACCACTAACAAAAATGCTTTTAGAGAAGTTGCTTTTCCTTCGGTGTTGGGCATCTGGCCTCCTAAACGTGCCTTTCGACTTTTCCAAACCCTGAAAAGCTGGGACTCCTGGCCTAGTCACCTTTGCCCTTATTCCTAGCATGGTACCTCAGACTGAGGCTCTCATTTAAGGAAACAACCCAGCCTTTGCCACAGGCATGTCTTACAATGTGGTCCAAGGCCAAGCCACTCACTCCTTTCTTTGTTTAAATGCCAACTGGGGTATTCTGGGTGGCCAAGTGTGAGTGTGGGGTGTCCTTGGCTTGGTCTCTCAAGATGGTTTGTGGCAGCCTGGCTACTTCATAACCCATCTCCTGTATGTGTCCTTTTAGTCAAATACTAAAAATAGCTCATGTGGAGGTATTTCTCTTGGTTTCAG
Seq C2 exon
TGACTATGAGAAACCAATGGACGTGAGAAATAGCAGCAGTCTACAGAGAATGGGCTCCTCTGAATCGACTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737:ENSRNOT00000028141:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGTTTGTGTTTGACCCG
R:
AGCCCATTCTCTGTAGACTGCT
Band lengths:
357-1336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]