BtaINT0034901 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52242566-52243855:+
Coord C1 exon
chr22:52242566-52242788
Coord A exon
chr22:52242789-52243781
Coord C2 exon
chr22:52243782-52243855
Length
993 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTTACTTTTCTTGGTTTCAGTGA
3' ss Score
7.65
Exon sequences
Seq C1 exon
GCGGCGGAGGCGGAGGAAGAGGGAGCGGGATCCCTAGGAGGCCCGGCGCCGCCATGGAACTGGGCCCGGAGCCCCCGCACCGCCGCCGCCTGCTCTTCGCCTGCAGCCCCCCGCCCGCACCGCAGCCCGTCGTGAAGGCGCTGTTTGGCACGCCAGCCGCCGGGGGCCTGTCGCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGCAGGGACTGGGCAG
Seq A exon
GTGAGGAGGGACCGAGGAGCGGTGCCGCAGGCGTTTGACCTCTCAGACGGCTCTCGGGTAGATCAGGCCAGAAAACCGGCCGCGAGGGTAGCGCTTGCCTCTCTGCCGCTCGGGGTTGGCCCCACCGACGGGGGCCCGCCATGTGCACCCTCCCCCCAGGCCGAATGTTGGGCGGGAGAGGCCGTTCGGACCCTCCGGGGCCGCCCTCAGCCCCGAGACGGGCCGGGTAGGGGGTGGGGTATGCCTGGGCTCCCCACCTTCGCCACCCCTTTTTAGATTGCCCTGTGCTCTTCTGTCCTTACCCCACGAAGCTCTTTGAAATCTGCCACCACGGGGAAAAACAGGCCCTCCTAGTCGCTCACTTCTATCCTTTTCAGAACCACCTCGTAGTTATCTTAGCTTTCTGTGAGTTCTGTTTCCTTCTCAGCCAAGGGACGTGGCGTTTTCTTTCCTTGCGTTTGCGGAAATCGTCGCAATCCCTCGCCTCGTGCATATTCCTGCTGTGTCCCCCCCAACACACCCAGCCCCATGCTTTCCTAAGACCAGGTCTTTTAACTCAGCTTTCCACTCCTAAAATTTTCCTGCACTTTTTCCTTATTAAAAAAATGCATCCCACCGTTTTTTTTTTTTTTTTTTTTTGTAAAGCCGGTTTCTCATCAGTCTTGGACGTCCCATTTTCTAAAGAAGCACATGTCTTTTCCAATCTCTGAAAAGCAGGAACTTGTCCTGTTCATTCCGGCTCCTAGCTCAGTACCTAGAACACATGCTCTCATTTCAGGAAGTAGTCCAATAGTCATTGTCCTCCTCCTATCTGCAGTGTGACCAATGCCAACCTACTCTTTTCTCATGTCCTTTTATATGTAAGTGCCAACTGGGTGTTCTGGGTGGCCTAAGTGTTTTGTGGTGTGGCCTAGAAGTAATGATGGTTCATGGCAGTATGGCAACTTGCCCTGTCATGGGCTATCTCCTGTGAGTTACTTTTCTTGGTTTCAG
Seq C2 exon
TGAGTATGAACAACCCATAGAGGTGAAAAACAGCAGTCTGCAGAGAATGGGCTCCTCCGAATCAACTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586:ENSBTAT00000012611:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=NA C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGGAGGAAGAGGGAG
R:
TCAGTTGATTCGGAGGAGCCC
Band lengths:
286-1279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]