HsaALTD0007521-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000197779 | ZNF81
Description
zinc finger protein 81 [Source:HGNC Symbol;Acc:13156]
Coordinates
chrX:47696286-47705720:+
Coord C1 exon
chrX:47696286-47696386
Coord A exon
NA
Coord C2 exon
chrX:47705504-47705720
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TATGGACACTGTCTTTCCAGAGT
3' ss Score
6.17
Exon sequences
Seq C1 exon
CTAGGGGTAGTGACCGGAAGCGGCTGCGGTTCTCGCCGGTTCTCAGCCGGGGTTTGATAGTTGTCAGGAGGATTCGACGTTCAGTGCCCAGGGATGTGGAG
Seq A exon
NA
Seq C2 exon
AGTTCTTGGAGTCTCTGCGGAGTCCCTGGGCCAGATCTCACAGTGAAAGCTGCAGGATCTTCCTTCTGACCCCAGCAGTCCCCGTTGAGTCCACCGATCCCACTGGAATTATAAAGTTGTCAGCAAGAAAGCCCCAGGGCTGAAGTCCAAGTCCGTCGGGAACATGCCAGCTAACGAGGACGCTCCCCAGCCAGGGGAACATGGCAGTGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197779-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.984
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCCGGGGTTTGATAGT
R:
TTCACTGTGAGATCTGGCCCA
Band lengths:
108-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)