HsaEX0074391 @ hg19
Exon Skipping
Gene
ENSG00000197779 | ZNF81
Description
zinc finger protein 81 [Source:HGNC Symbol;Acc:13156]
Coordinates
chrX:47696301-47705720:+
Coord C1 exon
chrX:47696301-47696386
Coord A exon
chrX:47702049-47702167
Coord C2 exon
chrX:47705504-47705720
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTTTTGATAGAGT
3' ss Score
6.88
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GGAAGCGGCTGCGGTTCTCGCCGGTTCTCAGCCGGGGTTTGATAGTTGTCAGGAGGATTCGACGTTCAGTGCCCAGGGATGTGGAG
Seq A exon
AGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTTTGTGTGATCTCAACTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAG
Seq C2 exon
AGTTCTTGGAGTCTCTGCGGAGTCCCTGGGCCAGATCTCACAGTGAAAGCTGCAGGATCTTCCTTCTGACCCCAGCAGTCCCCGTTGAGTCCACCGATCCCACTGGAATTATAAAGTTGTCAGCAAGAAAGCCCCAGGGCTGAAGTCCAAGTCCGTCGGGAACATGCCAGCTAACGAGGACGCTCCCCAGCCAGGGGAACATGGCAGTGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197779_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.984
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCCGGGGTTTGATAGT
R:
GTCCTCGTTAGCTGGCATGTT
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)