HsaALTD0007540-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000121903 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr1:33472587-33479705:+
Coord C1 exon
chr1:33472587-33472687
Coord A exon
NA
Coord C2 exon
chr1:33479179-33479705
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
3' ss Seq
CCTTTGTCTTTCTGCCTTAGAGC
3' ss Score
10.52
Exon sequences
Seq C1 exon
AGACGTTCCATTCCCAGGGTGGCGCCGCTCGGACTCCGCGTCCCAGCATTCCCCGCACGAGCCCGGGAGCACTTCCGCCCTGTTGTGAAGTGGGTGTCTCG
Seq A exon
NA
Seq C2 exon
AGCCTTGGGGAGCAGTCCCTTTTCTAGGAGCCTCTTGAAGGACTCACCGTAGATGCAGGAAGACATTGGATGAGGTCAGCATAGCTGAAGTGAGGTGTCTGGGTTAGACAATGGCTATGGCCCTGGAATTGCAAGCCCAGGCATCTCCGCAGCCAGAGCCTGAAGAACTCCTGATTGTGAAACTGGAAGAGGACTCTTGGGGATCAGAATCCAAACTCTGGGAGAAGGACCGTGGCTCTGTCTCTGGCCCAGAGGCCTCCCGCCAGCGCTTCAGGCAATTCCAATACAGGGATGCAGCTGGACCCCACGAGGCCTTCAGCCAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGGCCGGAGATCCGTCTCAAAGAGCAGATCCTGGAGCTGCTCGTGCTGGAGCAGTTCCTGACTATCTTGCCTAGGGAGGTCCAGACCTGGGTGCAGGCACGCCACCCTGAGAGTGGTGAGGAGGCTGTGGCCTTGGTGGAGGATTGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121903-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.197
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCGCCCTGTTGTGAAG
R:
TCCTGCATCTACGGTGAGTCC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains