HsaALTD0007541-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000182318 | ZSCAN22
Description
zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:4929]
Coordinates
chr19:58838375-58846571:+
Coord C1 exon
chr19:58838375-58838475
Coord A exon
chr19:58838476-58838480
Coord C2 exon
chr19:58846118-58846571
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AAGCTCTGACATTCCTGCAGGCC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GTGGGCCCTTGAGGTGTGCTGGGAGCTGTGGTCCGGGTCGGCGGGCGCGCAAGTTGGCTAGTCTCTGCGGCCACCTCCGGAAGGGTCCGCCGGCTGTGCTG
Seq A exon
GTGAG
Seq C2 exon
GCCCAGTTCCAAGGCTCCGGCATCCTGTGTCTCACTGAGCACTGCTGCCCGATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGGAGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGCTGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTCCGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGGAGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182318-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.267
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.8=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGGCTAGTCTCTGCGG
R:
GCTCAGTGAGACACAGGATGC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)