HsaEX0074569 @ hg19
Exon Skipping
Gene
ENSG00000182318 | ZSCAN22
Description
zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:4929]
Coordinates
chr19:58838385-58853692:+
Coord C1 exon
chr19:58838385-58838480
Coord A exon
chr19:58846118-58846571
Coord C2 exon
chr19:58849620-58853692
Length
454 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTGACATTCCTGCAGGCC
3' ss Score
6.11
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGGTGTGCTGGGAGCTGTGGTCCGGGTCGGCGGGCGCGCAAGTTGGCTAGTCTCTGCGGCCACCTCCGGAAGGGTCCGCCGGCTGTGCTGGTGAG
Seq A exon
GCCCAGTTCCAAGGCTCCGGCATCCTGTGTCTCACTGAGCACTGCTGCCCGATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGGAGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGCTGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTCCGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGGAGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAG
Seq C2 exon
GATGGGATCCAGGAGCCGAGCCCACAGAGGCAAGCTGCAAGCAGAGTGACCTGGGAGAGTCAGAGCCATCAAATGTCACTGAGACCCTCATGGGAGGTGTTTCCCTTGGACCCGCCTTTGTCAAGGCATGTGAACCTGAGGGCAGCTCAGAGAGGTCTGGACTATCAGGGGAGATCTGGACAAAGTCTGTCACCCAACAGATCCACTTCAAGAAAACTTCAGGGCCTTACAAGGATGTCCCCACAGACCAGCGTGGCCGTGAATCTGGTGCCTCGAGGAACAGTTCTAGTGCGTGGCCAAACCTCACCTCCCAAGAGAAGCCTCCTTCAGAAGACAAATTTGATCTGGTGGATGCTTATGGGACAGAGCCTCCATACACCTACTCAGGGAAGAGGTCCTCCAAGTGTCGCGAGTGTAGGAAGATGTTCCAGAGTGCTTCGGCGCTCGAGGCACACCAGAAGACCCATTCTCGGAAGACCCCATATGCCTGCAGCGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182318_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.267 C2=0.367
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=68.1)
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGGCTAGTCTCTGCGG
R:
TTTGGCCACGCACTAGAACTG
Band lengths:
358-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)