RnoEX0102297 @ rn6
Exon Skipping
Gene
ENSRNOG00000031113 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:RGD Symbol;Acc:7606541]
Coordinates
chr1:65677621-65687587:-
Coord C1 exon
chr1:65687359-65687587
Coord A exon
chr1:65681041-65681522
Coord C2 exon
chr1:65677621-65678708
Length
482 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCCCTTTTTTCAGATG
3' ss Score
12.87
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CCTGTACTAGGCTCGTTGGGAGTTGTGGCCCCCTGGGCACGAAGGCGCATGTGTATACGTCACCAGGGCGCCAGAGAAGTGACTGCTGGGAGTTCCGGAGACCCGGTGAGCGCGGGAACCCTGGCATGGAAGGGTGAGAGCTGCGAACGCCCACGCCAAACCTAACGGCCTGTGAGTACAGGACAGAGTGTGGGACGGACTGATTGAAGTATGGGACGACTGACGGAAT
Seq A exon
ATGGTGATGAAGCTCTAACATTTCTTCAGACCCAATTCTGAGACTTGAGTCATCCCTGTGACTCACTGAATTCTTCTGCCCAATGGCCATCCCCAAGAGCTCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTGCAGGTGAAGGTGAAAGAGGAAGAAGCTAGCGACTCTCAGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGCTGCACGCTTGCGCTTCAGGCACTTCCGGTATGAGGAGGCATCCAGCCCCCATCAGGCGCTAGCCCAACTGCGAGAGCTATGCTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGCTGGAACAGTTCCTGGGTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGGAAAGGAGGCCGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAG
Seq C2 exon
GATGGGAGCCAGGAATGGACCGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAGAAATGGCCACTGAAACCATCATGGGAAGTGTTTCCCCAGAGTCTACCCTTGCCCAGACTTGTAAACCTGAGAACAGCTCAGAGAGCCAGCCAGAGCTCCTAGGAGCACTCTGGGTGAAGTCTACTGCCCAAGAGGTGGATTTAAAAAAAGCTCTGGAGCCTCGCATGGATGCCCCCAATGACCAGCCTGACCATGAGTCTGATGCCTCAGGAAACGATTGCAGTATGTTGCCCAAATTCCCTTCTGAAGACAAGACTTCTTCAGAGGAGAAATGTGGCCCGTTACTTGATAATGAGACAGTGCCTCTAGACACATGTTCAGAGAAGAAGTCCTCCAAGGATAGTGAATGTATGAGAACACTCCAGAACACGTCAGCCCAAGAGACCCACCAGAAGAACCACTCTCAGAAGACACCCTATACCTGTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031113_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.254 C2=0.456
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=68.7)
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACTAGGCTCGTTGGGA
R:
TCTGGGCAAGGGTAGACTCTG
Band lengths:
358-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]