RnoINT0169481 @ rn6
Intron Retention
Gene
ENSRNOG00000031113 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:RGD Symbol;Acc:7606541]
Coordinates
chr1:65677621-65681440:-
Coord C1 exon
chr1:65681041-65681440
Coord A exon
chr1:65678709-65681040
Coord C2 exon
chr1:65677621-65678708
Length
2332 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGCTTTTTGAATGATTCCAGGAT
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATGGCCATCCCCAAGAGCTCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTGCAGGTGAAGGTGAAAGAGGAAGAAGCTAGCGACTCTCAGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGCTGCACGCTTGCGCTTCAGGCACTTCCGGTATGAGGAGGCATCCAGCCCCCATCAGGCGCTAGCCCAACTGCGAGAGCTATGCTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGCTGGAACAGTTCCTGGGTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGGAAAGGAGGCCGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAG
Seq A exon
GTAAGAAGGAGCAGCAGGCAGGTGGTCACTGATAGCTCTGGCACAGCCTGGCTGCAATGTTAAGCTCTAGTTCGGGATTGCTTGGGTACTCATTCTCGATGTTTGTACCTTAGCCATGGTTACAAATGACCAAATCCCAAGCCATTAAGGGTAAGGAGCTTACCAGCAGTAACCAGAAGATACATAACAACACTGAAGGAGTGAGCACTTGACACTGAGCTGGCTTGCTCTTACCCTCTCTCACATTCTATATCTCCATTAGGTCTACATTAATTTTATCTTATTTGTTTTTTAAAAGACAAGGTCTCTTGTACCCAGGCTTACCTCAAATTTGCTACATGGCTGAAAATGACCTTGAACTCCTGATCCTTCTGCCTCCACCTCACAAATGCTGAGGTTACAGGGATGTAGTACTACCATACCCAGCTTTAGGTGCCATGGGGGTCAAACCCAGAGCTTCCATGAGTGTAAGTAAGCACTCTGCCTGCTGAGTTACATCCCTAGCTTATTAGCATCTCCCTGAGGTGAGCAAAGGTAGCCCATCAGTCCCTGACTTGTCTCTTACCTAAGTGGATGGGGAAATAGCAAGCAGTGTCTAATGTGAGCCTCACCAAACCAGTCAGATATTCTGTTTGCCTTTGACCAGCAAATCCCAAGAACTAATAGTAAGCCTGAGGCACTTCCCTCAAGGAAGTGTAAGCTACTGACCCAGATGAAGTGACTGGATCCCTTGAGAGGGTGGGGAAAAGAAATAAGTATCTCTGTGTACTCTCTTGAGGCCTTTCCTATGCTAGCTTATAGGATCTGGGGGGCAGGAGTGGTTAGGTGCCCTGAGCTAGAATGGTCATTTACCATTCAAGGAGACCCACACATATATCCCAGCCCAAAGAAGTTTGGTAGGATGCAAAGACCCAAGCACTGTATGATCTAGACCAGAAACTTCCAGAGCAAGTACCAATCTGGATGCAAACTAACTGATCAAGTACAAATGCCTCAGCCTATCTACTAATTCTGTGATTTGTTTGTTTGTTTATTAAGGAGGGGTCTTACTATGTAGCTCTTGGTTTAGAACTACCGTGTAGTACTATGGCTTGAAACAAGTTATGTAGACAAGGCTGGCCTTGAACTCAGATTCTCTTGCCTCCATCTCTCAAGTGCTGGGACTAAAGCTGCTTGACAGTTCCTAGCTGATCCTGTGATCTCATACCAGGAGCTCAGCACCTCAGTTTCCTCATTTACTGAGTACCTCCTGGAATGGAAATGAAGTAGTGGAAGTTACACACTGCACTTGGAATGTAGCACATAACAAAACCCTGATGTGAGCCAGCGGCCCTGGCAGGCGGGCAGCACACAAACTGAGGTCCAGATGATGGCAATGTTATTCAAGGATTGGCCACTTGGTAGCTCAAAGTCTGGGGTAGAGCACTGTTTCTGAGTCCACTCAGCCCAGCTATACACTAAAACAACTATTGCATCCTTCTCTGACCCATCCCTGGGATTCATCTGTAAATGCTGTCAAACGTAGTATCATCCGATACCCTTTGCACCTATGAAGGGCTGGTCGGTGCAGGTAGGTGTGCCTTTCCCTCCTGTTACTCGGAGTTTCAGAAGCAGATCACTCACTCTCCACAGCAGCAGGTGTCTAAATTCTGCTGCGAGAAATGACAGTCACAGGTACCTGAACTGATTCTCATTTGGTCACTATTCCCAAAAACAGCTGCTGAGTTTAAGGGATGGAGCCTAGACTCACAGTGGTCTGCCCAAGACTGCAGGGAGGAGATGCACAGGTACCTGACAAGGACCAGCTCCCTTCACTCTTGTTTTGTTCTGATATTGTCCACATGAAAGCTTTCCTTTTGACATTTTAACCAAATCAGAAGCCTTAGCAAAATGGATGGCTTGGTTGAGGGTGGAAAAATCAGAACCATGAGGCAGTTTATTAGGGTTGTAGAAGAGGACAAACCTGAATCCCTTTTCTTTTCTTTCTTTCTTTCTTTTTCTTTATTAACTTGGGTATTTCTTATTTACATTTCAATTGTTATTCCCTTTCCCGGTTTCCGGGCCAACATCCCCCTAACCCCATCCCCTCTATATGGGTGTTCCCCTCCCTGTCCTCCCCCCATTACTGCCCTCCCCCCAACAATCACCTGAATCCCTTTTCTTACCCAAGACTCCAAAGGGGAAACCTCCCTTAGCAAAGGAGGCCTTGTGAGAAGAGTAATCCATATCTCCCCTTTCAGAGTAGGTGAGCTGGGACTCAAGCAGATGAAGAAGCTTATGTGGTGATCTGTGGTGAAAAAATAACAGTGTGCTGCTTTTTGAATGATTCCAG
Seq C2 exon
GATGGGAGCCAGGAATGGACCGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAGAAATGGCCACTGAAACCATCATGGGAAGTGTTTCCCCAGAGTCTACCCTTGCCCAGACTTGTAAACCTGAGAACAGCTCAGAGAGCCAGCCAGAGCTCCTAGGAGCACTCTGGGTGAAGTCTACTGCCCAAGAGGTGGATTTAAAAAAAGCTCTGGAGCCTCGCATGGATGCCCCCAATGACCAGCCTGACCATGAGTCTGATGCCTCAGGAAACGATTGCAGTATGTTGCCCAAATTCCCTTCTGAAGACAAGACTTCTTCAGAGGAGAAATGTGGCCCGTTACTTGATAATGAGACAGTGCCTCTAGACACATGTTCAGAGAAGAAGTCCTCCAAGGATAGTGAATGTATGAGAACACTCCAGAACACGTCAGCCCAAGAGACCCACCAGAAGAACCACTCTCAGAAGACACCCTATACCTGTATTGAATGTGGGAAGGTATTCAGTCGGAGCACCCACCTTGTCCAACACCAGGTTGTTCACACAGGAGCAAAGCCCCATGCATGTAAAGAGTGTGGTAAAGCCTTCAGTCGAGTTGCCCACCTGACCCAGCACCAGAGGATTCATACTGGGGAGAAACCTTATAAATGTGAAGAATGTGGAAAAACCTTCAGCCGCAGCACCCACCTCACGCAGCATCAGCGGGTACACACAGGCGAGCGGCCCTACGAGTGTGATACATGCGGCAAAGCCTTTAGCCAGAGCACCCACCTGACACAGCACCAGCGTATCCACACTGGAGAGAAGCCCTACAGGTGTGAAGTGTGTGGGAAAGCCTTCAGTGACTGTTCAGCTCTGGTCCGGCACCTGAGAGTCCACTCCGGAGAGAAGCCTTATCGGTGTAAGGACTGCCCCAAGGCCTTCGCACAAAGCTCCTCCCTCATTGAGCACCAGCGCACTCACACGGGTGAAAAGCCTTATAAATGCAGTGACTGTGGGAAAGCTTTTAGCCGCAGCTCAGCTCTCATGATGCACCTAAAGCTCCACATCACCGTGTCTCGAAGCACCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031113:ENSRNOT00000026305:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.456
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=68.7)
A:
NA
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]