HsaINT0188824 @ hg38
Intron Retention
Gene
ENSG00000182318 | ZSCAN22
Description
zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:HGNC:4929]
Coordinates
chr19:58334752-58342332:+
Coord C1 exon
chr19:58334752-58335205
Coord A exon
chr19:58335206-58338253
Coord C2 exon
chr19:58338254-58342332
Length
3048 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TGTGGTTCGGACTGTTTCAGGAT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GCCCAGTTCCAAGGCTCCGGCATCCTGTGTCTCACTGAGCACTGCTGCCCGATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGGAGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGCTGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTCCGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGGAGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAG
Seq A exon
GTAAAGGGGCGCCGTGGGCAGCTTCACGGCACACCAGAGATACACCCTGGACAGGAACATGGGAGCACAGGGCTCTGGTTTGGGGTTGCTCATGCACCCATTCTCACATTTGTACTTTACCGTAACTCTCACACACTGTTGTAGACAGGTGTGTTTTGGTTGCAGGTGACCAAAAGCGAGCTGAAATGGGCTGAAGCAAAGAAGGGTAAGGAGGCAGCAGATACGGCTATATCCAGAAGATCTGTTGACAGCATCAGAACTCTCTTCTTCCTCTCTTGTTCTGTTTCTCAGTTGGTTTTTTCTGTGTTAGCTTCATTCTTATTTTAGGTTCTCTTTCCAAAGGGGTTAAAGATAGCCAGGAACCCCAGGCTTATGTCTTACCAATGTAGAAACCCCGGGGTAATAACAATAAGAGGTCCCTGGTCTGAGCCCCCACTGGCCTGGTTGGGATCTTATGTTTGTGTTTGGCCAACCAAATCCCAGGGACTAACAGTGAGCAACTGGCTGTTTCTCAGAGGAAACCAGACGAGGGCCTGGGTGCCTGGGGTGGCTGTTGGGGGTGACGGAAATACCAGATGTCCCTGTGTACCTTCTCTATGCCCACCCTGGGCTGGCCTCCAGGATTTGGGTGGGTCAGACCTGCCCCAGGCTCAGCTGGGCACTGTTACTCACAGAGACCCACACAAACATCCCAACCCAGGGAGGTCCAGTGGGATGCAGGGAAGACCCAGCCTTGGGACAATCCAGAGCAGGGAGTGGTGGCTCGTCTCAGATGGGCTTGGCCTGGCCTATTGGCAACAGATAGGAGGTGGGCATACCACACACTGGGAGGAAACGTGCAGTGTGCAGGAGGAATGTGGAGTCTGGATACAGCTGCATCATCAAGGCTCAGTAGATCCAACCGCTGCTGCTCTTCCTGGCCATGTGACTCCCTTGTGCCTCAGTTTACTCATGGGTAAAATGGGGATTGTAATAAAAACGCCCACCTTAGTGGTGTTGCGAGATACAAGGCAATACCCGTGCAGCACCTGAAATGGTGCCTGGCACAGATTAAATAAATGGTAACTGCAACTGTTAGGATAATTTGTTCAGCTCTGGGAGAAACAGGCCTCTCTGGAACAGAGGTTGGTCTATGCCCAAGCAGATGTCACAGAGACAGGGAGAGGAAGGAGGGAGTGGCCCCATCCTCCCACAGGGTTGGCCAAAGCTCAGAGAAAGGGTAAAATGCAGAGGGAATGGTGGGGTCAAAGGCCTGGCAGTGTGATTTGCACTGGTGTATTCTGGTAAAAGCAGGTGGTGTGATGTTTCTGGATAGAGGAAGGAAGGGGGAGACAGGGCCAAGCAGATGGCTGGGGGAGCAGGGGAGACTGCCTGTGGACCTGGAGGAGAACATTCTGGAGCTGAAATCCCAACTGGGCCACTAGCTAACTGTGATCCTGTACCAGTTACTCAACACCTTCCCTCAGCTGGATTTCAGTTTCCCCATCTGCAACAGAATCACAGCAGTACCTCCTTCTGAGAGCAGGTCGAAGCTGAAATGAGGCGATGGAAGTCACCCACTGTGCTTGGGGCCCAGCACGACAAGAGCCTGATAGTGGTTAGTGGCCCTGGAAGGCCAGCGGCACAGCATCCATGGCTTACAGATGGGGAGACTGAGTCCCAGATGAGGGCAGGACTGATTAAGGTGGTAGACCTGGGGTTTGAGTCCAGTTTCTGCACTGCTGAGCCCCACTGTGGACTTGAGCAGTGGGTATTCCACCTGTCTCTGCCTCCTCCCTGGAATCCATCCAGTAGATGTGCCAGATTATGTGTCCTTTGCACCCATGCAGGGCAGGTCAGTGCGAGCATTCCTCTACCTCATGCACACTCTGATCTCCAAGAGCACCTCCGCCACACTCTGCCTTCATAGTACTTTACAATGTAGGGGCTTGAGAGGCCAGATGGGTACCTCATGTACTCACCCCCAGCAGCCATATTCTACCTGGGGTTCTACTTGCAGAAATTTTCACCATCGTGGGCTTCTGGATGGATTCCCTCATTCAGCCAGAATTCACTGAGCACCTGTGGACACATCCAGGCCTAGAGGCAAGGTGTTGAGTGTGAGGGACAGAACCGCAACCTCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGCGTTGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTCGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTCGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTCGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTCGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTCGAGTGTGAGGGACAGAACTCCAACCCCACAGAGATCAGAGCCTGCAGGGGACACATCCAGGCCTAGACGCAAGGTGTTGAGTGTGAGGGACAGAACTGCAACCCCACAGAGATCAGAGCCTGCAGGGGTGCATGTGCTCAGGGTCCTGACAAGGACAGACCCTCCCTCTCTCTCTGTCTCCAGATCAGTTCCACATCAGGGTTTCTCCTCTTGACTCTTGAGCCAAAATTGGGAGCCTTGAAAGATGGCGAGTTTGGTGGGAGGAGGAGAAATCAGAACCCATGGTGTAGTTTTGGATGGTGTGGGAGGACAGCCCTGCACCCTTTGTCATCCAAGACACCAAATGAGAAACTTCCCCTTGGAACTGGGGCCAGATGTTAGGAACGGGCCACATCTCCCCTTACAAAGTGTGACCGGGGCCCTCGGCAGAGTAGGGGAGGCTTGGTGTGGTAGGAGGAGTGACAGTGTGGTTCGGACTGTTTCAG
Seq C2 exon
GATGGGATCCAGGAGCCGAGCCCACAGAGGCAAGCTGCAAGCAGAGTGACCTGGGAGAGTCAGAGCCATCAAATGTCACTGAGACCCTCATGGGAGGTGTTTCCCTTGGACCCGCCTTTGTCAAGGCATGTGAACCTGAGGGCAGCTCAGAGAGGTCTGGACTATCAGGGGAGATCTGGACAAAGTCTGTCACCCAACAGATCCACTTCAAGAAAACTTCAGGGCCTTACAAGGATGTCCCCACAGACCAGCGTGGCCGTGAATCTGGTGCCTCGAGGAACAGTTCTAGTGCGTGGCCAAACCTCACCTCCCAAGAGAAGCCTCCTTCAGAAGACAAATTTGATCTGGTGGATGCTTATGGGACAGAGCCTCCATACACCTACTCAGGGAAGAGGTCCTCCAAGTGTCGCGAGTGTAGGAAGATGTTCCAGAGTGCTTCGGCGCTCGAGGCACACCAGAAGACCCATTCTCGGAAGACCCCATATGCCTGCAGCGAGTGTGGGAAAGCCTTCAGCCGGAGCACTCACCTCGCCCAGCACCAGGTTGTCCACACAGGGGCGAAGCCCCATGAGTGTAAGGAATGTGGGAAGGCCTTCAGCCGAGTCACCCACCTGACTCAGCACCAAAGGATTCATACTGGAGAGAAACCCTACAAATGTGGGGAATGTGGTAAAACCTTCAGCCGCAGCACTCACCTCACCCAGCACCAGCGGGTGCACACGGGGGAGCGGCCCTACGAGTGTGACGCGTGTGGGAAAGCCTTCAGCCAGAGCACGCACCTGACTCAACACCAGCGCATCCACACCGGGGAGAAGCCCTACAAGTGTGACGCGTGTGGCCGAGCCTTCAGCGACTGCTCAGCCCTGATCCGACATCTGAGAATCCACTCTGGAGAGAAGCCATATCAGTGTAAGGTTTGTCCGAAGGCCTTTGCACAGAGCTCCTCCCTCATTGAGCACCAGAGGATCCACACGGGAGAGAAGCCTTATAAGTGCAGCGACTGTGGGAAGGCCTTCAGTCGTAGCTCAGCCCTGATGGTTCACTTGCGGATCCACATCACGGTGCTGCAATGACCGGAAGTCGCCCCTGGGGGCGTAGCACAGCGTCTTCTCGGAGGCTCGAGGTCTAAGAGAAACGCTGAGTTCCTGAAGAGCCACAGACAGGGTGGGTGATTGATGAGTTGTCAAAATGATAGGTGCCTGAGGGCAGACTCGGGCTGTCTAGGAACCACTCTGCATTTGAGGAACCCTGATGAGCACAAGGTGATTCAGGCCAGCTGGAGAAGCTTCCAGAAGGGCCCTGCACTGCTACCCTCTATTTCCCACTCAGGGCTGTCCCAGAGAGAAGGCAGCCGAACTGAGGATTTAGACTGGTTCTGAGGGCCAGGGCAAATGAAGGCGCATGTCTCTCAGAACTCAGCGTCCCAAGACGCTCTGGGCGGGCCAACTGTAGCTTGTTCTCATGTGGTTCTTCTTGCCTGCTTTTCTGCTGCTTAGCCCAGAACGGACACCTGCCATGCCCACCTCTGTGCCTTGGCACCTACTATTTCCACTCCAGACTATTTTGTGCCTAACTGCAAGGCTGACTTTTGAGACTGCCTCTTCCACGATGCCTTTTCTACACTCTGCCTCTCTCATGGTTTCCTGTCGTAATCAGTGGTGCTGCTTGACACCTGCCCAGCATGTTCCTGTCTCTCCTTTTCCTTCCACATCCCACCAGTCACCAGCGCTATTGTTTTAACCTAAAGCTTATCTGTAATTCACCTCCTTTTCCACCACTGCTACCTTATGTGAGCCCTCATTGCCTCTTGCCTGGATTATAGCCGGGGTCTCCTTCCTGACCACTTCCTGCCTTTATTCTCTGCCCCTGTATCACTCTCCAGGGGACTCTTGATATTACTTAGATCTGACTGTGTCACTCCAAGGTGGAAAGCTCTCCAACCCATCTTCTACAGCACAGCTTCCTGAACAGGGTATAAGTATGCTGAGATGCAGGCTGCTCTGGGCCCCGAGCAACCTCTCCAGTTATCCTCATATGCATGTATGAATACTGTCATTTTTCTGTGCGTGCAGTGAAAATGGCCTCATCTCATACCATGGCTCCACCTTCCATACACCAGCCACACGGAACTACTGTGGTCCCTGAAGGAGCCATACATTTTCCCACTTATGTGCCTTTGTACCTGTGCCTGGAACCCTCCTCTTCTTTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCAGCTAGTTTTTTTTTTTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCCTCCTTTTTCATCTAAGGTGTTTCAAATGTTGCCCAAAGAAACCTCCCTGCTCTCCGGGAGCAGACTTCAGCTTGCCCTCTCTGCTTCCAGAGCACCTCCTAGATACCTCTCTTACAACTCCTGCCACCTTGTTTTACTTATTTGCTCCTTGTAGAGCTGCCTTTTCCAAGGATACCATAAACTCCTGAGAGCAGGGGCCATGTCTTACTCTCAGTATCTACAACACACAAGACTCAGTAGGCCCTGACTGATGTCTCTTACATGAATGTGACTGGTGCCCCCAGGAGGCAGTCACCGTGCTGTCTCTGCCCCACATTGTCCTTATGTATGTTTACATGGATGTCTCCCCAGCAGCTTGAACCCTGGAGAGCAAGAATAATCTGATTTTCCTGGGGGCCAGCACCCAAATAAGCCTGGCATGCAGTGGCCTCAATAAAATGTGACTGTATTGAGTCATTTTCTAGGGCCCCAGATCCCCTGGTGTCATGGACTTAGTCTTTGCCAGCATTCTGTCCATGTGTTCTCTGGTCTTCTCTCACAATGCTGCATCCCTGTCCCATTTTTAGGGTCCCTGTCTATCACTGGATGCTGCAGCTTCTGTTCATTACTGTTAGTGTATCATTCTTCATGCCTCTGTTTCTGTGATGGTCTCATCATATGTGAACCATTTGACCTGGCGTATTGTGTACTAGTCACCGTCACCATCTCTCCATATGTATCTCCCTGTATTTCGGGCCCATTCCCTCTATGTCAAGAGTAAATAGAGGCACAGAGACTGATGAGAAACGTTCATAACATGAAGGTAAGACTCAGGGAGACAGAGACTTTGTGGAAGTATCTCTGAGGGAGTCCCAGACACAGGCAGAGAGGGCCACATATCGTGTGCCAGAGGCTGAGAGACTGAGAGGGATGACAGGCTTAGGGGAAAACTCAGAGAGGAGAGATGCACATTCCTAGTGAAATTGCACAGGCTTCCAGCATGCTGGAGGGAACAGAAAAGGCATGGGCCTGAATTCAGGCTGCAGAGCCTGACTCCTCCCTGTGGCTACTTTTGGGACCTAAGATAAGTGACTTTCCTGAACCTCCATGACCTCCTCATATGTAAACCAGGGACAGGACCCACCTTGTGTAGTGCCTGACCCAAAGCCTGGCCCTGCACACTGTCTCTGACTCACAGCAATCATCAGCACCTCTCTTTGCCTCCTACTTGCTCAGTCTCTGTCACAAGAACTGGATCTCCATCCCCTTGATGCTCTGAGCATCTTCACCCATTTGGTCGTTGAGACATATCTGTCCATGTCTGTCTAAAAGGGGAGGAGATGAGGGAGAAAAAAGGGAATCTACTCAGAGCCTGTGTGTGCTGCCCAGTCTACCAAATAATTTATATACATCTCAGTCCTCACACAACCATCCCTGTTTTATAGAGGAGGAAGTGGCTTAGAGAATGTAACTGACCAAAGTCACACTGCCAGGAACTGGAAGCACTAGGATTTGACAGCATATCCAAATATGTCAGCAATTTCAATAAACATGACTGTACTCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182318:ENST00000329665:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.367
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=68.1)
A:
NA
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains