HsaEX0074569 @ hg38
Exon Skipping
Gene
ENSG00000182318 | ZSCAN22
Description
zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:HGNC:4929]
Coordinates
chr19:58327019-58342332:+
Coord C1 exon
chr19:58327019-58327114
Coord A exon
chr19:58334752-58335205
Coord C2 exon
chr19:58338254-58342332
Length
454 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTGACATTCCTGCAGGCC
3' ss Score
6.11
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGGTGTGCTGGGAGCTGTGGTCCGGGTCGGCGGGCGCGCAAGTTGGCTAGTCTCTGCGGCCACCTCCGGAAGGGTCCGCCGGCTGTGCTGGTGAG
Seq A exon
GCCCAGTTCCAAGGCTCCGGCATCCTGTGTCTCACTGAGCACTGCTGCCCGATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGGAGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGCTGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTCCGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGGAGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAG
Seq C2 exon
GATGGGATCCAGGAGCCGAGCCCACAGAGGCAAGCTGCAAGCAGAGTGACCTGGGAGAGTCAGAGCCATCAAATGTCACTGAGACCCTCATGGGAGGTGTTTCCCTTGGACCCGCCTTTGTCAAGGCATGTGAACCTGAGGGCAGCTCAGAGAGGTCTGGACTATCAGGGGAGATCTGGACAAAGTCTGTCACCCAACAGATCCACTTCAAGAAAACTTCAGGGCCTTACAAGGATGTCCCCACAGACCAGCGTGGCCGTGAATCTGGTGCCTCGAGGAACAGTTCTAGTGCGTGGCCAAACCTCACCTCCCAAGAGAAGCCTCCTTCAGAAGACAAATTTGATCTGGTGGATGCTTATGGGACAGAGCCTCCATACACCTACTCAGGGAAGAGGTCCTCCAAGTGTCGCGAGTGTAGGAAGATGTTCCAGAGTGCTTCGGCGCTCGAGGCACACCAGAAGACCCATTCTCGGAAGACCCCATATGCCTGCAGCGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182318_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.267 C2=0.367
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=68.1)
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGGCTAGTCTCTGCGG
R:
TTTGGCCACGCACTAGAACTG
Band lengths:
358-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development